Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00441 ATGGGGAAAGTGAAGGGGAAGCATCGTTTGGACAAGTACTATCACCTAGCCAAGGAGCATGGCTATCGTTCTCGTGCCTCCTGGAAGCTCGCACAGCTTGATTCTAAATACACATTTCTCCGTTCCTCTCGCTCTGTTCTCGACCTGTGCGCCGCCCCTGGTGGCTGGATGCAGGTCGCTATCGAGCGTGTTCCGGTGGGCGGTCTCGTTCTTGGAGTCGATTTGGTTCCCATAGCTCCTATTCGCGGGGCAATCGCTATTCAGCAGGATATCACGAAGCCTGAATGCAAGGCCAGGATCAAGAAGATTATGAGCGAGAAAGGATGTGTAGCTTTTGATTTGGTGCTGCACGATGGGTCACCTAATGTTGGTGGTGCGTGGTCGCAAGAGGCCATGACTCAAAATGCTTTAGTTATTGATGCAGTGAAGTTGGCAACGCAATTTTTGGCTCCAAATGGCGCATTTGTGACGAAAGTCTTCAGGTCACAAGACTACAATTCTGTGCGCTATTGCCTTAAGCAGTTGTTTGAAAAGGTTGAGGTTGAAAAGCCAGCTGCTAGTAGATCTGCATCTGCAGAAATATATCTCTTGTGTCTTAAGTACAAAGCACCAGCAAAGATTGACCCACGTCTTCTTGATGTGAAACATTTGTTTCAGGGATCCATTGAACCCCCACGGATGGTTGTCGACGTTCTAAGGGGAACAAAGCAGAAAAGGCATCGTGACGGTTATGAGGATGGTGACGTCACTTTGAGAAAAATGTCTCTGGTGGCTGATTTCATTTGGTCTGATTCTCCTCTTGAGATTCTAGGTTCAGTCACTTCTTTGACTTTTGATGATCCAGCATGTTTGGCTATAAAGGATCATGCTTTAACTACCGTAAATGTCAAATGTCTTTGTGATGATTTACGCGTTTTGAATGAGCGAGACTTTAGGGATCTACTGAAGTGGCGGATCAACATAAGAAAAGCCTTGTCATCTAAAGAAAAGAATGTCTCTACTCCTGCATTAGACGTTGAAAATGAGGAGGATGAGGATGATAAGATACTCAATGAAATGGAGGAGCTGACCCATGCTACAGAGCGTAAGAAGAAACGAGAAAAGAAGATTCTTTCAAAAAGGCGGGCCAAGGAAAAGGCACGGAAAGCAACAGGGATGCAACTAGATGTTGTGGAAGACGGTTATATTGATAATGAATTGTTCTCTCTTTCGATCATGAAGGGAAAGAAAGATCTTGCTGTTGTTGATTCAGTTGAATATGAACATGAGAATGCCGATGTGGGAGAACACAATGAAGACAAGGAGGCTGAAGAACCTTCATCTAGTGATGTGGATTCTGACGAAGAACGTCAAAGATACGATGAAGAAGTGGAAGAACTTTTAGACAAGGCATATGAACGCTATGTGGCCATAAAAGAGGGAAGTACGAAGCACAGGAAACGTGCAAAACAAGCCCGCTCAGAAGATGCCCAACTGCTTGAGGATGGTGATGGTGATGGTGATGATATAATTCATTCTTACGAAGATTCGGACGGAGACCAAGCTGATAAGGATGAAAATCCTCTGGTGGTACCACTCAATGAGGGACAAGAGCCAACACCAGATGAGATTACCAACAAGTGGTTTAGTCAGGATATTTTTGCCGAGGCTGTGAAAGAGGGAGACTTGGGGAAATCTGATAGCGAGGATGACATGCAGATCGATGCAGCATCAAGAAAACTCACCATTTCCAAGAAGGCTGAGGTTAAGGCCAAGCAAAAACAAAGGAATAAAGATGTGGGTAATGGATCTCAAACTGAAGCTTCGAAGTCAGAAAATGATTTTGAGATAGTCCCCGCCCCTGCTACTGATTCAAGCGATGACTCTTCGTCGTCGGATGATTCAGAGGATGATGACCCCAACACAAAAGCTGAAATATTGGCTTGTGCAAAGAAGATGCTGAGGAAAAAGCAAAGGAATCAGATTCTCGACGATTCATACAACAAATATATGTTTCACGATGATGGTTTACCCAAGTGGTTCCTTGATGAAGAACAAAAGCATAGGCAGCCTATTAAGCCCGTGACAAAGGAGGAGATGGCTGCAATGAGAGCACAGTTCAAAGAAATCGATGCCCGTCCTGCTAAAAAGGTTGCACAGGCCAAAGCAAGGAAGAAGCGGGTGGCGATGAGGAAACTGGAGAAGGTTCGGAAGAAGGCAAATGCCATTTCTGACCAACCAGACATATCTGATCGCTCAAAAAGCAAGATGATTGAACAACTCTACAAGAAGGCCACACCGAAGAGACCTAAAAAGGAGTATGTGGTAGCAAAGAAAGGAGTACAGGTGAAGACTGGGAAGGGAAAAGTCCTTGTTGATAGACGAATGAAGAAAGACATGAGGGCTCAACGGGCGAGTACGTCTGGCAAAGGTAAAGGTTCGAAGAAAGGGAAAAACTTCAAGGCTCCGAGAGGCAAAGGGTCCGACAAGGCTTCGGCAAAGAAAGGAAAAAAAAGACAGACGATGGCCATGCATGACTGA 2520 45.08 MGKVKGKHRLDKYYHLAKEHGYRSRASWKLAQLDSKYTFLRSSRSVLDLCAAPGGWMQVAIERVPVGGLVLGVDLVPIAPIRGAIAIQQDITKPECKARIKKIMSEKGCVAFDLVLHDGSPNVGGAWSQEAMTQNALVIDAVKLATQFLAPNGAFVTKVFRSQDYNSVRYCLKQLFEKVEVEKPAASRSASAEIYLLCLKYKAPAKIDPRLLDVKHLFQGSIEPPRMVVDVLRGTKQKRHRDGYEDGDVTLRKMSLVADFIWSDSPLEILGSVTSLTFDDPACLAIKDHALTTVNVKCLCDDLRVLNERDFRDLLKWRINIRKALSSKEKNVSTPALDVENEEDEDDKILNEMEELTHATERKKKREKKILSKRRAKEKARKATGMQLDVVEDGYIDNELFSLSIMKGKKDLAVVDSVEYEHENADVGEHNEDKEAEEPSSSDVDSDEERQRYDEEVEELLDKAYERYVAIKEGSTKHRKRAKQARSEDAQLLEDGDGDGDDIIHSYEDSDGDQADKDENPLVVPLNEGQEPTPDEITNKWFSQDIFAEAVKEGDLGKSDSEDDMQIDAASRKLTISKKAEVKAKQKQRNKDVGNGSQTEASKSENDFEIVPAPATDSSDDSSSSDDSEDDDPNTKAEILACAKKMLRKKQRNQILDDSYNKYMFHDDGLPKWFLDEEQKHRQPIKPVTKEEMAAMRAQFKEIDARPAKKVAQAKARKKRVAMRKLEKVRKKANAISDQPDISDRSKSKMIEQLYKKATPKRPKKEYVVAKKGVQVKTGKGKVLVDRRMKKDMRAQRASTSGKGKGSKKGKNFKAPRGKGSDKASAKKGKKRQTMAMHD 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14674777 14681389 - Bma021293.1 Bma05g00441 82525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00441 839 PANTHER RRNA METHYLTRANSFERASE-RELATED 1 803 - -
Bma05g00441 839 MobiDBLite consensus disorder prediction 781 798 - -
Bma05g00441 839 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 1 803 - -
Bma05g00441 839 MobiDBLite consensus disorder prediction 438 455 - -
Bma05g00441 839 MobiDBLite consensus disorder prediction 707 839 - -
Bma05g00441 839 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510|GO:0008168
Bma05g00441 839 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 803 IPR028589 GO:0008649|GO:0031167
Bma05g00441 839 MobiDBLite consensus disorder prediction 712 727 - -
Bma05g00441 839 Coils Coil 339 359 - -
Bma05g00441 839 MobiDBLite consensus disorder prediction 357 378 - -
Bma05g00441 839 MobiDBLite consensus disorder prediction 363 378 - -
Bma05g00441 839 MobiDBLite consensus disorder prediction 482 518 - -
Bma05g00441 839 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 202 IPR029063 -
Bma05g00441 839 MobiDBLite consensus disorder prediction 422 456 - -
Bma05g00441 839 MobiDBLite consensus disorder prediction 474 638 - -
Bma05g00441 839 MobiDBLite consensus disorder prediction 728 771 - -
Bma05g00441 839 Gene3D Vaccinia Virus protein VP39 19 208 IPR029063 -
Bma05g00441 839 Pfam FtsJ-like methyltransferase 22 201 IPR002877 GO:0008168|GO:0032259
Bma05g00441 839 MobiDBLite consensus disorder prediction 422 437 - -
Bma05g00441 839 Pfam Spb1 C-terminal domain 602 798 IPR012920 GO:0005634|GO:0006364|GO:0008168
Bma05g00441 839 MobiDBLite consensus disorder prediction 815 829 - -
Bma05g00441 839 MobiDBLite consensus disorder prediction 551 590 - -
Bma05g00441 839 MobiDBLite consensus disorder prediction 591 605 - -
Bma05g00441 839 Pfam Domain of unknown function (DUF3381) 235 381 IPR024576 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00441 K14857 SPB1, FTSJ3; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-] - twl:120001953 1102.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00441 Bma-Chr5:14674777 Bma10g00324 Bma-Chr10:2986537 8.00E-21 dispersed
Bma05g00441 Bma-Chr5:14674777 Bma05g00448 Bma-Chr5:15009572 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g363 Blo02g00806 . . Bda08g00942 . . Bma05g00441 . . . Cma02g00391 . Car02g00254 Car20g00730 . . . . . . . . . . . . . . . . . Cone12ag1158 Cone8ag1207 . . Lsi10g00379 . Chy11g00372 . . . . . . . . . Sed01g0297 Cmo02g00398 Cmo20g00854 . . . . Cpe16g00247 Cpe05g01265 Bhi10g01995 Tan05g1293 Cmetu11g1187 . Hepe08g1009 . . . . . . . . . . Csa02g01268 . Cme11g00124
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007268 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00441 Bma_Chr05 FPKM 8.095283 10.309759 8.292523 7.959594 4.318359 4.888745 4.412668 12.041423 11.204632 10.894882