Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00447 ATGGAGAAGAAAAGCCGAATACTCATAATCGGAGCGACGGGAAATCTAGGACGCCATTTGGCCGAAGCCAGCCTCCATTTTTCCCACCCAACCTTTGCTCTTGTCAGGGACTCTGCTTTCTCCGATCCCCTCAAATTTCAGACCCTCCAATCTCTCGCCAACGCCGGCGTCACACTTCTCAGAGGTTCTCTGCACGATGAAGTTAGTCTCATTGAAGCCGTCAAACAGGTGGATGTGGTCGTCTGTGCCGTTTCTTCTAAACAGGTCTCCGATCAAAAGCTTCTGATTACTGTTATTAAAGAATCTGGATGCATCAAAAGGTTTATTCCGGCAGAGTTTGGGTCAGACCCAGATAAAGTTCAGATATTAGGCATGGAATACAACGTTTATTCCCGGAAAAGAGAAATTCGACGACTTGTGGAAGCCAAAGGCATTCCACACACTTACGTCTCTTGCAACTTCTTTATGAGTTATTTACTTCCTTCGCTCGTTCAACCCGGCCAGAAAAGTCCTCCGACGGACAAAGTCACGGTGTTTGGCGATGGAAATACGAAAGGGGTGTTTGTGAAGGAGAGTGATGTAGCTGCCTTCACAATTAGCACAGTTGATGATCCACGCACATTGAACAAGGTACTCTATCTGAGGCCCCCTGGAAATGTTTACTCCATTAATGAGCTGGTTCAACTTTGGGAGAATAAGATTGGAAAAAAGCTCGACAAGATTTATGTTGACGAAAAGGATCTGCTCATGAAAATCGAAGAAACACCTTATCCTGACAAAATGGAGTTGATCTTCATATATTCTGGTTTTGTCAAGGGAGATCAGACCTACTTTGACATCGATTCGGTGGCGAACGGGGTAGACGGGATGCAGCTGTATCCGCAACTTAAGCACACCACGATTAGCGAGTTTTTAAGCACATTATTATCAAAATGA 936 44.98 MEKKSRILIIGATGNLGRHLAEASLHFSHPTFALVRDSAFSDPLKFQTLQSLANAGVTLLRGSLHDEVSLIEAVKQVDVVVCAVSSKQVSDQKLLITVIKESGCIKRFIPAEFGSDPDKVQILGMEYNVYSRKREIRRLVEAKGIPHTYVSCNFFMSYLLPSLVQPGQKSPPTDKVTVFGDGNTKGVFVKESDVAAFTISTVDDPRTLNKVLYLRPPGNVYSINELVQLWENKIGKKLDKIYVDEKDLLMKIEETPYPDKMELIFIYSGFVKGDQTYFDIDSVANGVDGMQLYPQLKHTTISEFLSTLLSK 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14960218 14962322 - Bma031187 Bma05g00447 82531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00447 311 Pfam NmrA-like family 7 237 IPR008030 -
Bma05g00447 311 PANTHER PINORESINOL REDUCTASE-RELATED 3 307 - -
Bma05g00447 311 CDD PCBER_SDR_a 6 291 IPR045312 GO:0016491
Bma05g00447 311 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 279 IPR036291 -
Bma05g00447 311 Gene3D - 6 295 - -
Bma05g00447 311 PANTHER PINORESINOL-LARICIRESINOL REDUCTASE 3-RELATED 3 307 - -
Bma05g00447 311 Gene3D - 154 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00447 - - - qsu:112038620 461.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00447 Bma-Chr5:14960218 Bma09g00405 Bma-Chr9:34207372 3.37E-99 dispersed
Bma05g00446 Bma-Chr5:14958287 Bma05g00447 Bma-Chr5:14960218 3.55E-108 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g371 . . . . . . Bma05g00447 . . . . . . . Sed11g1039 . . Bhi05g01241 Tan02g1978 Cmetu01g0347 . . . . . . . . . . . . . . . Lsi10g00376 . . . . . . . . . . . . . . . . . . . Cpe05g01264 Bhi10g01998 Tan05g1296 . . . . . . . . . . . . . Csa02g01265 . Cme11g00121
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00447 Bma_Chr05 FPKM 7.68062 7.641556 8.19545 9.027957 7.410289 7.108412 7.545983 10.105865 9.678054 11.074196