Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00463 TGTAAGGTTTCCATGGAGAACTGTAATGGAAATGGCCCAACGGATAATGGCCATATGGTAGTGAGAAGCTCTCTCTATCACTCCTCCTGCATCAATCTAGCATTATCTTGGCTTGACATAAGAGTTATTTGCGTTAGAGTCAGTAAATTTGAGATTGATGATTTTACTCCTGACCACCTCACACTAACCCACTTTCCACTAGTTCCTGAAACCCTTTTAGAAATCAATGGAGTTAGAAGCAGCATAATGTACTCCGATGGGATGTCGACCCTGCTCCGACGGGATCGGCTCGACAAGAAATCTGTAGAAGTAACTTTTGTCAGCACTGATAGTATAAGAATGACAGGAAGTGTTAAATTTGAGGTTTTCGACAAGGATGTCCTTGTGCTGTCTGGGGTTTTAGAATTGTGTGATAGTAATGGCTTCGTCGGAGAATCGAACAATAATGGCCGGAGATGGAGCATGAATTTCGATGCGGATGTGATTAATGGTTCAAGTAGTAGCTTCTTGAAGGAGAAACAAGTTTTGAGCCAACACTCTGCTTCTCCTACAATTGAGGTTTATATTGCAGGGTCCTTTTTGGGCTCTCCGATTATACTGACGAAGAATTTTCAGCTTAGTTCTCGGAAGAAGCCGACGAAGAAGATGATGCTGGAAGCAATACCGGAATATGATACAACACTATGCCCATGCACAGCTTATAGCTATGGTCTTCCCACTCCAAGGAGGGCTCGTCAGATGTCAGAGTACACTAACCATGAAGGAGAAAACCGAGACGGCTATAACATGTTCACAGTAGGAGAATACTTTGGAGAAGAAGACGAAGAGCTTTCATGGTTTAGTGCTGGCGTGAGAGTTGGTGTCGGAATCGGTCTCAGCATTTGTCTCGGAGTAGGAATTGGAGTCGGATTGTTAGTACGAACCTATCAAGGCACCACCCGAAACTTTAGGAGACGGCTTCTGTAA 966 43.89 CKVSMENCNGNGPTDNGHMVVRSSLYHSSCINLALSWLDIRVICVRVSKFEIDDFTPDHLTLTHFPLVPETLLEINGVRSSIMYSDGMSTLLRRDRLDKKSVEVTFVSTDSIRMTGSVKFEVFDKDVLVLSGVLELCDSNGFVGESNNNGRRWSMNFDADVINGSSSSFLKEKQVLSQHSASPTIEVYIAGSFLGSPIILTKNFQLSSRKKPTKKMMLEAIPEYDTTLCPCTAYSYGLPTPRRARQMSEYTNHEGENRDGYNMFTVGEYFGEEDEELSWFSAGVRVGVGIGLSICLGVGIGVGLLVRTYQGTTRNFRRRLL 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15903408 15904869 + Bma021330.1 Bma05g00463 82547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00463 321 PANTHER FORMATE DEHYDROGENASE 1 5 321 - -
Bma05g00463 321 PANTHER ERYTHRONATE-4-PHOSPHATE DEHYDROGENASE FAMILY PROTEIN 5 321 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00463 - - - qsu:112017498 363.614
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02318 Bma-Chr1:80706143 Bma05g00463 Bma-Chr5:15903408 7.49E-79 dispersed
Bma05g00463 Bma-Chr5:15903408 Bma05g00115 Bma-Chr5:3575716 1.70E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g589 Blo02g00954 . Bda06g00942 Bda08g01289 . . Bma05g00463 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1199 . Cone10ag1170 . . . . . . . . . Bpe05g00497 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019337 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00463 Bma_Chr05 FPKM 29.828438 32.800423 28.448582 31.701527 13.890856 16.508503 13.733561 36.517551 34.43605 36.5037