Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00475 ATGGTAGCTTCAGCTTTCACTTCCTCTCTCAGCTTCTCAGTCGCGTCGCGCAGCAAAACCTCTCATATTCCTATTTTCTGTCCAAGAAACTCGCTGAGATCGATAGTCTCTGCCCTTCGCAGTCCTTATGGTGGTTCTTCCTCAATTGGACTATCAAGTAAATCTAGTGGGATTCCTCTAAATATTAACGAAAAAGATCGTAACTCCAGCACAAGTTATGGAGTTATAGAAGCAAAGAAGGGGAATCCGCCCCTAATGCCTGCAGTGATGACACCAGGGGGACCTTTGGACCTTTCAACTGTACTATTTAGGAACCGAATCATTTTTATTGGACAACCTGTCAACTCACAGGTGGCACAACGTGTTATATCCCAACTTGTCACTCTAGCAACCATTGATGAGGATTCAGATATCTTGATATATTTGAACTGCCCTGGTGGAAGCACATATTCCATACTAGCAATTTATGACTGTATGTCTTGGATAAAACCTAAGGTTGGGACGGTATGTTTTGGTGTTGCTGCAAGTCAAGGTGCTCTTCTCCTTGCGGGGGGAGAAAAGGGAATGCGTTATGCCATGCCAAATGCCCGTATAATGATACACCAACCACAAAGCGGCTGCGGGGGTCATGTGGAAGATGTGAGGCGGCAAGTGAACGAAGCAGTTCAATCTCGTCATAAAATTGACAAGATGTATTCTGCTTTCACCGGCCAATCTCTTGAAAAAGTGCAACAATACACTGAAAGGGATCGATTTCTGTCTGTGTCCGAGGCATTGGAGTTTGGACTGATAGATGGGGTGCTGGAAACTGAATATTGA 819 44.69 MVASAFTSSLSFSVASRSKTSHIPIFCPRNSLRSIVSALRSPYGGSSSIGLSSKSSGIPLNINEKDRNSSTSYGVIEAKKGNPPLMPAVMTPGGPLDLSTVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDEDSDILIYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSAFTGQSLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17762557 17765870 - Bma021371.1 Bma05g00475 82559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00475 272 CDD S14_ClpP_2 97 267 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bma05g00475 272 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 13 272 IPR023562 -
Bma05g00475 272 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 85 271 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bma05g00475 272 Gene3D - 77 272 - -
Bma05g00475 272 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC 13 272 - -
Bma05g00475 272 ProSitePatterns Endopeptidase Clp histidine active site. 190 203 IPR033135 -
Bma05g00475 272 Pfam Clp protease 97 270 IPR023562 -
Bma05g00475 272 PRINTS Clp protease catalytic subunit P signature 137 157 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bma05g00475 272 PRINTS Clp protease catalytic subunit P signature 246 265 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bma05g00475 272 PRINTS Clp protease catalytic subunit P signature 97 112 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bma05g00475 272 PRINTS Clp protease catalytic subunit P signature 189 208 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bma05g00475 272 PRINTS Clp protease catalytic subunit P signature 168 185 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bma05g00475 272 SUPERFAMILY ClpP/crotonase 96 270 IPR029045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00475 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - qsu:112035054 450.669
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00475 Bma-Chr5:17762557 Bma13g00087 Bma-Chr13:925099 1.78E-50 dispersed
Bma05g00475 Bma-Chr5:17762557 Bma10g00921 Bma-Chr10:18645523 2.16E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g569 . . . Bda08g00901 . . Bma05g00475 . . . Cma02g00409 . Car02g00268 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00353 . Chy11g00395 . . . . . . . . . . Cmo02g00413 . . . . . . Cpe05g01249 Bhi10g02028 Tan05g1325 Cmetu11g1874 . Hepe08g1028 . . . . . . . . . . Csa02g01243 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011349 2 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00475 Bma_Chr05 FPKM 3.359087 3.683075 6.18294 5.854965 7.843366 7.365938 9.279504 9.057794 8.922339 9.964737