Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00500 ATGAGTTCCAGTGAAGGAATATGCTTCACAGAAGAGCAGGAAGCTCTGGTGGTGAAGTCATGGAATGTGATGAAGAAGAACGCTGCTGAATTCGGTCTTAAATTGTTCATCAAGATATTTGAAATCGCGCCGTCAGCCAAGAAGATGTTCTCATTCTTGAAGGACTCGAACGTTCCTCTGGAGCAGAACAGAAAACTCAAGACACACGCCTTATCTGTCTTCACCATGACGTGTGAATCAGCAGCTCAACTGAGGAAATCTGGAAAGGTGACGGTGAGGGAGTCGAGCTTGAAGAAGCTGGGAGCAGTCCACTCCAGTTACGGGGTTGCTGACGAACATTTCGAGGTACGTCCGATGTGTTGA 363 47.38 MSSSEGICFTEEQEALVVKSWNVMKKNAAEFGLKLFIKIFEIAPSAKKMFSFLKDSNVPLEQNRKLKTHALSVFTMTCESAAQLRKSGKVTVRESSLKKLGAVHSSYGVADEHFEVRPMC 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22797650 22798175 - Bma021430.1 Bma05g00500 82584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00500 120 ProSiteProfiles Globin family profile. 9 116 IPR000971 GO:0020037
Bma05g00500 120 PANTHER LEGHEMOGLOBIN-RELATED 5 116 IPR001032 GO:0019825|GO:0020037
Bma05g00500 120 PANTHER HEMOGLOBIN 1, GLB1,NSHB1,ATGLB1,HB1 5 116 - -
Bma05g00500 120 Gene3D Globins 7 119 IPR012292 GO:0019825|GO:0020037
Bma05g00500 120 PRINTS Plant globin signature 35 55 - -
Bma05g00500 120 PRINTS Plant globin signature 10 27 - -
Bma05g00500 120 PRINTS Plant globin signature 63 91 - -
Bma05g00500 120 SUPERFAMILY Globin-like 7 116 IPR009050 -
Bma05g00500 120 Pfam Globin 34 116 IPR000971 GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00500 - - - twl:119980132 190.274
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00500 Bma-Chr5:22797650 Bma05g00503 Bma-Chr5:23045625 3.37E-45 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g541 Blo02g00792 . . Bda08g00916 . . Bma05g00500 . . . . . . Car20g00749 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007931 2 0 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00500 Bma_Chr05 FPKM 3.503901 5.437014 10.717125 11.264167 6.937778 6.833727 7.43685 4.206708 3.64239 4.270907