Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00503 ATGTTCTCATTCTTGAAGGACTCGAACGTTCCTCTGGAGCAGAACAGAAAACTCAAGACACACGCCTTATCTGTCTTCACCATGACGTGTGAATCAGCAGCTCAACTGAGGAAATCTGGAAAGGTGACGGTGAGGGAGTCGAGCTTGAAGAAGCTGGGAGCAGTCCACTCCAGTTACGGGGTTGCTGACGAACATTTCGAGGTGACGAGATTTGCGCTGTTGGAAATTATAAAGGACGCAGTACCAGAAATGTGGTCTACGGAGATGAAGAGTGCGTGGGGAGAGGCATACGATCAGCTGGTTTCTGCCATTAAATCGGAGATGAAGTAA 330 48.48 MFSFLKDSNVPLEQNRKLKTHALSVFTMTCESAAQLRKSGKVTVRESSLKKLGAVHSSYGVADEHFEVTRFALLEIIKDAVPEMWSTEMKSAWGEAYDQLVSAIKSEMK 109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23045625 23046101 - Bma021435.1 Bma05g00503 82587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00503 109 PANTHER LEGHEMOGLOBIN-RELATED 1 109 IPR001032 GO:0019825|GO:0020037
Bma05g00503 109 PRINTS Plant globin signature 80 106 - -
Bma05g00503 109 PRINTS Plant globin signature 15 43 - -
Bma05g00503 109 ProSiteProfiles Globin family profile. 1 109 IPR000971 GO:0020037
Bma05g00503 109 Gene3D Globins 1 107 IPR012292 GO:0019825|GO:0020037
Bma05g00503 109 PANTHER HEMOGLOBIN 1, GLB1,NSHB1,ATGLB1,HB1 1 109 - -
Bma05g00503 109 Pfam Globin 1 104 IPR000971 GO:0020037
Bma05g00503 109 SUPERFAMILY Globin-like 1 109 IPR009050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00503 - - - cit:102616792 186.422
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00367 Bma-Chr3:2736871 Bma05g00503 Bma-Chr5:23045625 8.76E-40 dispersed
Bma05g00500 Bma-Chr5:22797650 Bma05g00503 Bma-Chr5:23045625 3.37E-45 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g540 . . . Bda08g00904 . . Bma05g00503 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007931 2 0 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00503 Bma_Chr05 FPKM 18.176218 19.391047 4.502147 3.940521 4.967276 5.065259 5.137295 5.659938 5.893111 5.334305