Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00508 ATGGCGATTGTTAAAAGTGAAGAAACAGAAGAAGAGAGACAGAAGAGTTTGTTCTTTTTAGACTCTCTCTACTGTTACGAAGAGAGATGGGAGGAAGACGAAGACGAAGACGAAGAAGATGATGAATGTGAAAAGAGTTCAGAAGAAGAAGAAGAAGAGCTTCTCTCTCTAATCTCCAAAGAAGAAGAAGAACACCGACGTCCGATTGTTGAAAATTTCAAATGTGATGCAGTACTGTGTTGGGCTCGCTCTGAGGCTGTGAAGTTGATTCTAAAAGTTAAAAACCAGTTTGGATTCTCAGCTTTGACCGCCATTTTAGCCATCGACTACCTCGATCGTTTCTTGTCTAGTCTGCAGTTTCAGAGAGAGAAGCCATGGATGAGTCAACTCGTTGCTGTTGCTTGCCTCTCACTTGCAGCGAAAGTGGAAGAAACCCAAGTCCCTCTTCTTCTCGATCTTCAAGTAGAGGAGACAGAATTTGTTTTTGAAGGGAAGACGGTTCAGAGAATGGAGCTTCTTGTTCTTTTTGCTCTTCAATGGCGGATGCATCCAGTAACTCCATATTCATTTATGAATCTCATCGCCGGAAAGATCGGATTAAAGACCAATTTATATCATGAATTTCTTAGTCTTTTCGATAGTCTTCTTCTCTCACTTCTCGCAGATTCAAGATCTGTGAGTTATCTTCCTTCTGCCATGGCTGCCCCTGCAATGGTGAGAGTTTTAGAGGAGATAGAGGCCCGTAAATCAATGGAGTACAAGAATCAGATTCTCGGTGTTCTTAAAATGAGCAAAGATAATTTAAGTGACTGTTACAGTCTGATACTTGAGCTGTCGAACGCCGATTTCAATGGCGGTAAAACCTCCGTAAGGAGAAGATTCTATCAAGGTCCGGGGAGGCCGAATGGAGTCGCCGATGCGGTTTTTAGCTCCGACTGCTCTAATGATTCCTGGTCTGTGCTTTATTCCCCCGTTTCTCCTATCGTAGAACCGCCATTGAAGAAAAGCAGAGCTCAAAATCAAATGGCGAAATTTCCATCCTTGATTACTTGA 1053 42.74 MAIVKSEETEEERQKSLFFLDSLYCYEERWEEDEDEDEEDDECEKSSEEEEEELLSLISKEEEEHRRPIVENFKCDAVLCWARSEAVKLILKVKNQFGFSALTAILAIDYLDRFLSSLQFQREKPWMSQLVAVACLSLAAKVEETQVPLLLDLQVEETEFVFEGKTVQRMELLVLFALQWRMHPVTPYSFMNLIAGKIGLKTNLYHEFLSLFDSLLLSLLADSRSVSYLPSAMAAPAMVRVLEEIEARKSMEYKNQILGVLKMSKDNLSDCYSLILELSNADFNGGKTSVRRRFYQGPGRPNGVADAVFSSDCSNDSWSVLYSPVSPIVEPPLKKSRAQNQMAKFPSLIT 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23352071 23354071 - Bma021440.1 Bma05g00508 82592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00508 350 Gene3D - 62 273 - -
Bma05g00508 350 Gene3D - 69 183 - -
Bma05g00508 350 SMART cyclin_7 88 176 IPR013763 -
Bma05g00508 350 PANTHER CYCLIN D3.1 PROTEIN 48 336 - -
Bma05g00508 350 PANTHER CYCLINS 48 336 IPR039361 -
Bma05g00508 350 CDD CYCLIN 83 175 IPR013763 -
Bma05g00508 350 Coils Coil 44 64 - -
Bma05g00508 350 Pfam Cyclin, C-terminal domain 185 292 IPR004367 -
Bma05g00508 350 SUPERFAMILY Cyclin-like 47 183 IPR036915 -
Bma05g00508 350 SMART Cyclin_C_2 185 312 IPR004367 -
Bma05g00508 350 MobiDBLite consensus disorder prediction 30 49 - -
Bma05g00508 350 Pfam Cyclin, N-terminal domain 81 182 IPR006671 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g01357 Bma05g00508 CCT
Bma03g01357 Bma05g00508 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00468 Bma-Chr5:16824730 Bma05g00508 Bma-Chr5:23352071 2.37E-37 dispersed
Bma05g00508 Bma-Chr5:23352071 Bma01g00471 Bma-Chr1:3888163 2.91E-91 dispersed
Bma05g00507 Bma-Chr5:23314540 Bma05g00508 Bma-Chr5:23352071 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00508 K14505 - vvi:100264093 308.145