Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00512 ATGCCTGGGAATGTAGAGCCGTTGGATTTGCGAGTACAGATTCCATACCACTTCAGGTGTCCCATCTCTCTGGAGCTGATGCGAGACCCCGTCACCGTGAGCACCGGCCAGACCTACGACCGGACCAGCATCGAATCATGGGTCGCCACCGGTAACACCACCTGCCCCGTCACCCGCTCACCCCTCTCCGATTTCACTCTTATCCCCAACCACACCCTCCGCCGCCTTATCCAGGATTGGTGCGTCGCCAACCGCTCCTTCGGTGTCGAACGTATCCCCACTCCCAAACAGCCTGCCGACCATGCCTTGCTTCGCTCCCTGCTCTCTCAGGCCTCCGCCGCCTCTCTTCCTCCCCACTCTCGTCTCGCCGGTCTTCGCCGACTCAGATGTCTCGCTCGTGACTCGGAGAAAAATCGGTCGGTCATTTCCTCTCTCGACGCTCAAGAGATTCTGCTTGAAATTTTGTTTTCAGATTTGGATGCCGATTCGGGCGAGTTGAACACTGAGGCTCTGGGGGTTCTGGTTATGTTTCCGCTCACGGAGCCGGAGTGCGTTTCGGTTTCTTCGGTTCTTCGTAGAATCTCCTACCTCTCGCGCTTGCTATTCAATTCTTCTATGGAAGTTAGGGTTAACTCCGCCGCGATGATCGAAATCATTGTATCGGGGACTCGATCGCCGGAGCTTCGAGCTGAAATCGGCAATGTGGAAGAGATTTTCTACGGAGTTATTGAACTTCTGCGAAGTCCAATTGCTTTTCCCCGGGGACTTAAAATCGGAATAAAGGCCTTGTTCGCCTTATGCCTAGCGAAGCAGACCAGACACAAGGCGGTTTCGGCCGGAGTGGCGGAGATTCTCATAGACAGACTGGCGGATTTCGAAAAGTGCGACGCCGAGCGAGCTCTCGCAACAATCGAGCTCCTATGTCGGATTCCGAGCGGTTGCACTGCTTTCTCCGCACATGCTCTGACAGTCCCGATGCTTGTGAAACTGATTCTCAAAATCTCGGACCGCGCCACTGAGTACGCAGCCGGGGCTTTATTCTCGCTCTGCTCGGAGTCGGAGCATAGCCAGAGAGAGGCGGTGGCGGCAGGAATACTAACCCAGTTGCTTCTTCTAGTACAAAGCGATTGCACGGACCGGGCAAAGCGAAAGGCACAGTTACTGTTGAAGCTTCTCCGTGATTCCTGGCAGGAAGATTCCATCGGTAGGTCGGACGATTTTTCTTGCGGTGAAGTAGAAATACAGTTCTGA 1251 54.6 MPGNVEPLDLRVQIPYHFRCPISLELMRDPVTVSTGQTYDRTSIESWVATGNTTCPVTRSPLSDFTLIPNHTLRRLIQDWCVANRSFGVERIPTPKQPADHALLRSLLSQASAASLPPHSRLAGLRRLRCLARDSEKNRSVISSLDAQEILLEILFSDLDADSGELNTEALGVLVMFPLTEPECVSVSSVLRRISYLSRLLFNSSMEVRVNSAAMIEIIVSGTRSPELRAEIGNVEEIFYGVIELLRSPIAFPRGLKIGIKALFALCLAKQTRHKAVSAGVAEILIDRLADFEKCDAERALATIELLCRIPSGCTAFSAHALTVPMLVKLILKISDRATEYAAGALFSLCSESEHSQREAVAAGILTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWQEDSIGRSDDFSCGEVEIQF 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24684940 24686190 - Bma021452.1 Bma05g00512 82596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00512 416 SUPERFAMILY ARM repeat 117 392 IPR016024 -
Bma05g00512 416 CDD RING-Ubox_PUB 18 59 IPR045210 -
Bma05g00512 416 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Bma05g00512 416 Gene3D - 291 404 IPR011989 -
Bma05g00512 416 PANTHER WDSAM1 PROTEIN 5 412 IPR045185 GO:0061630
Bma05g00512 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Bma05g00512 416 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Bma05g00512 416 SUPERFAMILY RING/U-box 11 88 - -
Bma05g00512 416 Gene3D - 96 290 IPR011989 -
Bma05g00512 416 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Bma05g00512 416 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00508 Bma-Chr1:4176395 Bma05g00512 Bma-Chr5:24684940 2.56E-56 dispersed
Bma03g01153 Bma-Chr3:15777958 Bma05g00512 Bma-Chr5:24684940 3.76E-42 dispersed
Bma05g00512 Bma-Chr5:24684940 Bma08g00115 Bma-Chr8:1430525 3.09E-61 dispersed
Bma06g00334 Bma-Chr6:7154614 Bma05g00512 Bma-Chr5:24684940 1.32E-39 dispersed
Bma05g00512 Bma-Chr5:24684940 Bma11g00250 Bma-Chr11:2202280 7.48E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00512 - - mnt:21410125 635.565