Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma05g00512 | ATGCCTGGGAATGTAGAGCCGTTGGATTTGCGAGTACAGATTCCATACCACTTCAGGTGTCCCATCTCTCTGGAGCTGATGCGAGACCCCGTCACCGTGAGCACCGGCCAGACCTACGACCGGACCAGCATCGAATCATGGGTCGCCACCGGTAACACCACCTGCCCCGTCACCCGCTCACCCCTCTCCGATTTCACTCTTATCCCCAACCACACCCTCCGCCGCCTTATCCAGGATTGGTGCGTCGCCAACCGCTCCTTCGGTGTCGAACGTATCCCCACTCCCAAACAGCCTGCCGACCATGCCTTGCTTCGCTCCCTGCTCTCTCAGGCCTCCGCCGCCTCTCTTCCTCCCCACTCTCGTCTCGCCGGTCTTCGCCGACTCAGATGTCTCGCTCGTGACTCGGAGAAAAATCGGTCGGTCATTTCCTCTCTCGACGCTCAAGAGATTCTGCTTGAAATTTTGTTTTCAGATTTGGATGCCGATTCGGGCGAGTTGAACACTGAGGCTCTGGGGGTTCTGGTTATGTTTCCGCTCACGGAGCCGGAGTGCGTTTCGGTTTCTTCGGTTCTTCGTAGAATCTCCTACCTCTCGCGCTTGCTATTCAATTCTTCTATGGAAGTTAGGGTTAACTCCGCCGCGATGATCGAAATCATTGTATCGGGGACTCGATCGCCGGAGCTTCGAGCTGAAATCGGCAATGTGGAAGAGATTTTCTACGGAGTTATTGAACTTCTGCGAAGTCCAATTGCTTTTCCCCGGGGACTTAAAATCGGAATAAAGGCCTTGTTCGCCTTATGCCTAGCGAAGCAGACCAGACACAAGGCGGTTTCGGCCGGAGTGGCGGAGATTCTCATAGACAGACTGGCGGATTTCGAAAAGTGCGACGCCGAGCGAGCTCTCGCAACAATCGAGCTCCTATGTCGGATTCCGAGCGGTTGCACTGCTTTCTCCGCACATGCTCTGACAGTCCCGATGCTTGTGAAACTGATTCTCAAAATCTCGGACCGCGCCACTGAGTACGCAGCCGGGGCTTTATTCTCGCTCTGCTCGGAGTCGGAGCATAGCCAGAGAGAGGCGGTGGCGGCAGGAATACTAACCCAGTTGCTTCTTCTAGTACAAAGCGATTGCACGGACCGGGCAAAGCGAAAGGCACAGTTACTGTTGAAGCTTCTCCGTGATTCCTGGCAGGAAGATTCCATCGGTAGGTCGGACGATTTTTCTTGCGGTGAAGTAGAAATACAGTTCTGA | 1251 | 54.6 | MPGNVEPLDLRVQIPYHFRCPISLELMRDPVTVSTGQTYDRTSIESWVATGNTTCPVTRSPLSDFTLIPNHTLRRLIQDWCVANRSFGVERIPTPKQPADHALLRSLLSQASAASLPPHSRLAGLRRLRCLARDSEKNRSVISSLDAQEILLEILFSDLDADSGELNTEALGVLVMFPLTEPECVSVSSVLRRISYLSRLLFNSSMEVRVNSAAMIEIIVSGTRSPELRAEIGNVEEIFYGVIELLRSPIAFPRGLKIGIKALFALCLAKQTRHKAVSAGVAEILIDRLADFEKCDAERALATIELLCRIPSGCTAFSAHALTVPMLVKLILKISDRATEYAAGALFSLCSESEHSQREAVAAGILTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWQEDSIGRSDDFSCGEVEIQF | 416 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 24684940 | 24686190 | - | Bma021452.1 | Bma05g00512 | 82596 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma05g00512 | 416 | SUPERFAMILY | ARM repeat | 117 | 392 | IPR016024 | - | |
Bma05g00512 | 416 | CDD | RING-Ubox_PUB | 18 | 59 | IPR045210 | - | |
Bma05g00512 | 416 | Pfam | U-box domain | 14 | 85 | IPR003613 | GO:0004842|GO:0016567 | |
Bma05g00512 | 416 | Gene3D | - | 291 | 404 | IPR011989 | - | |
Bma05g00512 | 416 | PANTHER | WDSAM1 PROTEIN | 5 | 412 | IPR045185 | GO:0061630 | |
Bma05g00512 | 416 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 87 | IPR013083 | - | |
Bma05g00512 | 416 | SMART | Ubox_2 | 17 | 80 | IPR003613 | GO:0004842|GO:0016567 | |
Bma05g00512 | 416 | SUPERFAMILY | RING/U-box | 11 | 88 | - | - | |
Bma05g00512 | 416 | Gene3D | - | 96 | 290 | IPR011989 | - | |
Bma05g00512 | 416 | ProSiteProfiles | U-box domain profile. | 13 | 87 | IPR003613 | GO:0004842|GO:0016567 | |
Bma05g00512 | 416 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 5 | 412 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00508 | Bma-Chr1:4176395 | Bma05g00512 | Bma-Chr5:24684940 | 2.56E-56 | dispersed | |
Bma03g01153 | Bma-Chr3:15777958 | Bma05g00512 | Bma-Chr5:24684940 | 3.76E-42 | dispersed | |
Bma05g00512 | Bma-Chr5:24684940 | Bma08g00115 | Bma-Chr8:1430525 | 3.09E-61 | dispersed | |
Bma06g00334 | Bma-Chr6:7154614 | Bma05g00512 | Bma-Chr5:24684940 | 1.32E-39 | dispersed | |
Bma05g00512 | Bma-Chr5:24684940 | Bma11g00250 | Bma-Chr11:2202280 | 7.48E-55 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma05g00512 | - | - | mnt:21410125 | 635.565 |