Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00514 ATGGGTATATCTGTAAATCATAGGGGCTCGAGAGCTGGGACGAATCAGGACGGTTTGCCCGTAAAAAATGAGTTTCTTCCGACGGCGACGCAGAAGAAATGGACTAATCTGATGCCTTTAGTCGTAGCCCTTGTTGTGTTTGCAGAAATTGCCTTTCTGGGTCGCCTCGACTTGGCTAAAAACAGTGCCTTGGTCGATTCCTGGGCCGACCTGTTCTATCAGTCGCCTTCGTCGCGGGAGGCGTTGCTGGGAGTTGATGATTTTAATTATGGATCTATTGTTGGCGATGAGATTGTAGAATTTGAGAGCTGCGAGTATTGGTTAGAGAAAGAAGACGCTGTTGTGTATTCTAGGGATTTTGAAAACGAACCCATCTTTGTTTCTGGTGGTGAGAAGGAGTGGAGATCATGTGCAGTGGGATGTGAATTTGGATCAATTCCTAGTAAGAAGCCTGATGCTGCATTTGGTTTACATGGTGGACCAAATAGTATACTCCGTTCCATGGAATCGGCCCAGTACTATGCAGAGAACAATATTGCAATTGCACGACGGAAAGGTTATAGTATTATAATGACCACCAGTCTCTCGTCAGATGTTCCCGTCGGATATTTTTCGTGGGCGGAGTATGATATCATGGCCCCAGTACAACAAAAGACTGAGACATCTCTTGCAGCTGCTTTTATTTCAAATTGTGGTGCTCGTAACTTTCGGTTGGAAGCTCTGGAGGCTCTTGAAAAGTTGAACATCAAGATTGATTCGTATGGTGGTTGCCACAGGAACCGTGACGGAAGAGGAACAATTCCCGTGGTGGTTGGGGCTCCAAATATAGAAGATTTTGCTCCTTATCCTGGTTCAATTTTACATATCAAGGAGCCTTCAGATGTTGAGCCAGTTGCAAAAGCCATGAAATATCTTTCAGAAAATCCAGATGTATATAACCAGTCATTGAGATGGAAATATGAAGGTCCATCTGATTCATTCAAGGCCCTAGTGGATATGGCAGCAGTTCACTCATCATGCCGGCTTTGCATTCACTTGGCGACATCCATTCGGGATAAAGAAGAAAAGAGGCCTGGCTTTAAGAAACGTCCTTGCAGGTGTACGAGAGGCTCAGAAACCGTGTACCATTTATACGTCAGAGAAAGAGGGAGGTTTGATTTTGAGTCTATTTTCTTAAGGTCTGGAAATTTGACGCTGGCGGCTCTCGAGTCGGCGGTGCTCGAAAAGTTCAGTTCTAAAAAGCATATTCCAATATGGAAGGAGGAAAGACCGGAAAGCATAAGAGGCGGGGATGAACTGAAAGTGTATAGAATATATCCTCTTGGGTTGACTCAAAGACAGGCATTGTATAGCTTCAGACTAAAAGGGGATTCTGATCTGAGAAATCACGTGGAGAGCCATCCCTGTGCAAAGCTTGAAGTCATCTTTGTTTAG 1434 44.63 MGISVNHRGSRAGTNQDGLPVKNEFLPTATQKKWTNLMPLVVALVVFAEIAFLGRLDLAKNSALVDSWADLFYQSPSSREALLGVDDFNYGSIVGDEIVEFESCEYWLEKEDAVVYSRDFENEPIFVSGGEKEWRSCAVGCEFGSIPSKKPDAAFGLHGGPNSILRSMESAQYYAENNIAIARRKGYSIIMTTSLSSDVPVGYFSWAEYDIMAPVQQKTETSLAAAFISNCGARNFRLEALEALEKLNIKIDSYGGCHRNRDGRGTIPVVVGAPNIEDFAPYPGSILHIKEPSDVEPVAKAMKYLSENPDVYNQSLRWKYEGPSDSFKALVDMAAVHSSCRLCIHLATSIRDKEEKRPGFKKRPCRCTRGSETVYHLYVRERGRFDFESIFLRSGNLTLAALESAVLEKFSSKKHIPIWKEERPESIRGGDELKVYRIYPLGLTQRQALYSFRLKGDSDLRNHVESHPCAKLEVIFV 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25445802 25449550 - Bma021457.2 Bma05g00514 82598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00514 477 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 265 454 IPR001503 GO:0006486|GO:0008417|GO:0016020
Bma05g00514 477 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 116 352 - -
Bma05g00514 477 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 264 351 IPR001503 GO:0006486|GO:0008417|GO:0016020
Bma05g00514 477 PANTHER FUCOSYLTRANSFERASE-LIKE PROTEIN-RELATED 265 454 - -
Bma05g00514 477 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 36 264 IPR001503 GO:0006486|GO:0008417|GO:0016020
Bma05g00514 477 PANTHER FUCOSYLTRANSFERASE-LIKE PROTEIN-RELATED 36 264 - -
Bma05g00514 477 Gene3D - 264 326 IPR038577 -
Bma05g00514 477 Gene3D - 168 263 IPR038577 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00514 K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] - zju:107427081 713.761
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00514 Bma-Chr5:25445802 Bma12g00448 Bma-Chr12:11296475 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g408 Blo02g00831 Blo15g00748 Bda06g01072 Bda08g00885 . . Bma05g00514 . Cmo19g00620 . . . . . . . Cpe15g00486 Bhi05g01063 . . . . . . Cla02g00602 Cam02g0631 Cec02g0631 Cco02g0650 Clacu02g0635 Cmu02g0631 Cre02g0955 . . Cone3ag1179 Cone10ag0987 . Csa07g00757 . Cme01g00052 . . . . . . . . . . . . Cma19g00602 . Car19g00455 Cpe14g00294 Cpe01g00439 . . . . . . . . . . . . . . . . Chy01g00056 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g01656 . 49 536 Xyloglucan Fucosyltransferase1 AT1G14080 54.9 2.7e-156 548.9
Bma14g01656 . 69 537 Xyloglucan Fucosyltransferase1 AT1G14100 56.7 4.7e-158 554.7
Bma14g01656 . 67 540 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 4.1e-140 495.0
Bma12g00448 . 1 511 Xyloglucan Fucosyltransferase1 AT1G49710 62.8 4.4e-188 654.4
Bma12g00445 . 1 521 Xyloglucan Fucosyltransferase1 AT1G49710 62.2 8.2e-187 650.2
Bma05g00514 . 1 477 Xyloglucan Fucosyltransferase1 AT1G49710 58.9 6.6e-168 587.4
Bma02g00194 . 1 403 Xyloglucan Fucosyltransferase1 AT1G71990 69.1 4.7e-161 564.3
Bma14g01656 . 1 536 Xyloglucan Fucosyltransferase1 AT2G03210 56.9 6.4e-180 627.5
Bma14g01656 . 1 534 Xyloglucan Fucosyltransferase1 AT2G03220 62.5 6.6e-198 687.2
Bma14g00185 . 2 329 Xyloglucan Fucosyltransferase1 AT2G03220 52.4 3.2e-99 359.4
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15350 52.2 5.4e-146 514.6
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15370 52.5 7.6e-143 504.2
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15390 53.9 1.3e-150 530.0
Bma12g00445 . 1 521 Xyloglucan Fucosyltransferase1 AT3G19280 62.8 1.2e-187 652.9
Bma12g00448 . 1 511 Xyloglucan Fucosyltransferase1 AT3G19280 63.1 2.8e-187 651.7
Bma05g00514 . 1 477 Xyloglucan Fucosyltransferase1 AT3G19280 58.7 9.3e-167 583.6
Bma14g01656 . 1 536 Xyloglucan Fucosyltransferase1 AT2G03210 56.9 6.4e-180 627.5
Bma14g01656 . 1 534 Xyloglucan Fucosyltransferase1 AT2G03220 62.5 6.6e-198 687.2
Bma14g00185 . 2 329 Xyloglucan Fucosyltransferase1 AT2G03220 52.4 3.2e-99 359.4
Bma14g01656 . 1 536 Xyloglucan Fucosyltransferase1 AT2G03210 56.9 6.4e-180 627.5
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15390 53.9 1.3e-150 530.0
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15370 52.5 7.6e-143 504.2
Bma14g01656 . 49 536 Xyloglucan Fucosyltransferase1 AT1G14080 54.9 2.7e-156 548.9
Bma14g01656 . 69 537 Xyloglucan Fucosyltransferase1 AT1G14100 56.7 4.7e-158 554.7
Bma14g01656 . 67 540 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 4.1e-140 495.0
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15350 52.2 5.4e-146 514.6
Bma12g00445 . 1 521 Xyloglucan Fucosyltransferase1 AT3G19280 62.8 1.2e-187 652.9
Bma12g00448 . 1 511 Xyloglucan Fucosyltransferase1 AT3G19280 63.1 2.8e-187 651.7
Bma05g00514 . 1 477 Xyloglucan Fucosyltransferase1 AT3G19280 58.7 9.3e-167 583.6
Bma12g00448 . 1 511 Xyloglucan Fucosyltransferase1 AT1G49710 62.8 4.4e-188 654.4
Bma12g00445 . 1 521 Xyloglucan Fucosyltransferase1 AT1G49710 62.2 8.2e-187 650.2
Bma05g00514 . 1 477 Xyloglucan Fucosyltransferase1 AT1G49710 58.9 6.6e-168 587.4
Bma02g00194 . 1 403 Xyloglucan Fucosyltransferase1 AT1G71990 69.1 4.7e-161 564.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00514 Bma_Chr05 FPKM 0.0 0.0 0.245412 0.0 5.087679 4.050182 4.486357 0.0 0.0 0.0