Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00518 ATGGTTAGGAGGAATCTTCTATTTCTATGCCCGAGCTCCGAATGCGAACGCTATTATCCAAATCTTTCAATGGAAGAGGATGAGGAGGCGCTCTCTATTTCATCTCCCGGCGATTCTACTACCCAAGATCACTCCAGCGCTGGGGATGAGGGCTTCGGAGACGAAGACAGTGAAAACGAAGAATCGATCACCCTCTCTCCCCAATCTGTCCAGGACAGAAAATCGAAGAATGTGGATGCTCTTTTGAAAGGCAACCTTGTTGTCACAAGGCAATCACTCCTTCCAAGAGTTCTCTTAGTGACTGAAGGTGCAGAAGGTTGTAGAAAACCATTCAAACCTCCATGTTCTAATGGGTATGATGAAAAAAACAACCAGCTTACACGACGCCTGTGGGCAAGGAAAAGGTTTATACCATGGGGCTCCTCCAGGCCAGTTTCGGTTGCAATTACAAATCAGGTGAAGTTAGCAAATGATGTTGAAAAAGATTTGGAGGAGGAAAGTGCAACTCTACCAGCTGGGATTGATCCTTTGATCTTATGGCAACCTGAAGAATCTGAGATAACTGCCTCTAATGTGGAACCAATATCTGTGGATCCTTTGCTAGTTTGTTATCTACGCCCCCATCAAAGAGAAGGAGTGCAGTTCATGTTTGATTGTGTTTCAGGACTACACAAAGATGAAAATATATTCGGATGCATTCTAGCTGATGATATGGGCTTGGGAAAGACATTGCAGTCAATCTCAATACTGTACACGCTTCTTCGCCAAGGGCTTGATGGGAAGCCAATGCTTAAAAAAGCCATCATAGTCACTCCAACCAGTCTTGTAAGCAACTGGGAGGCTGAAATAAAGAAGTGGATTGGAGAAAGAGTACAGGTAATTGCGCTGTGTGAAAGCGCCAGAAGTGATGTCGTCTCAGGCATTGAAAACTTCATAAACCCTCGCAGTTCTCTACAGGTGCTAATTGTTTCATATGAGACATTCCGGATGCATTCATCGAAATTTAGTCATACAGAAGCATGTGATTTACTCATATGTGATGAGGCTCACCGCCTAAAGAATGACCAGACTTTGACGAATCGGGCATTAGCATCGTTGTCATGCAAGCGTCGGATTTTGTTGTCAGGAACACCCATGCAGAATGACCTAGAAGAGTTCTTCTCCATGGTTAACTTTACTAATCCAGGAATCTTGGGTGAGGTTACATATTTTCGTCGATATTACGAGGCACCTATTATATGTGGAAGAGAACCTACTGCCACTGAAGAAGAGAAAAGTCTAGGAGTTGAACGAACAGCAGAATTGAGTGCTAAAGTCAATAAGTTTATTTTGCGAAGGACGAATGCACTCTTATCAAACCACTTGCCACCAAAGATAGTTGAAGTAGTTTGTTGCAGGTTGACTCCTCTCCAATCAGACTTGTACAAGCATTTTATTCAGACAAAAAACGTTAAACGGGTAATTAATGAAGAAATAAAGCAATCTAAGATTTTGGCGTACATAACAGCCCTTAAAAAGCTGTGTAACCATCCAAAGCTCATATATGATACAATAAAAAGTGGGAGTCCTGGAACTTCAGGGTTTGAGGACTGTATGCGCTTTTTCCCTTCAGAAATGATCTCTGGAAGATCTGGTACATGGACCGGGGGAGATGGGGCATGGGTTGAGCTGTCAGGAAAAATGCATGTCTTAGCTCGATTGCTTGCACATTTACGTCAAAGAACGAATGATCGAATTGTCCTTGTCTCAAACTACACTCAGACACTGGATTTATTTGCTCAATTATGTCGTGAAAGGAGATATCCTTTCTTGAGGCTTGATGGGACCACATCTATCAGTAAACGGCAAAAGTTGGTCAATAGTTTTAACGACGTAGCAAAGGATGAGTTTGTTTTTCTCCTAAGCAGTAAGGCTGGTGGCTGCGGCTTAAATTTGATTGGTGGGAATAGACTAGTATTGTTTGATCCAGACTGGAATCCTGCCAATGATAAACAAGCAGCAGCAAGAGTCTGGAGAGATGGACAAAGGAAGAGAGTTTACATTTACCGATTTTTGAGCACTGGAACAATTGAAGAAAAGGTGTACCAGCGTCAGATGTCAAAAGAAGGTCTCCAAAAAGTTATTCAAGTAGATCAGTCAAAGAGTTCTACTAACCAAATGAATTTTCTTTCCATAGAAGATCTACGTGATCTATTTTCATTTCCCGATACTGTGAGGTCTGAAATCCATGAAAATATGAACTGCGTCCGTTGCCAGAATTGCAATGATATGGTTGAGGACACAGACAAAAACCAAATAATGAACGAAACTTGTCAATCTGACCAAGAGTCCTCTGACATAGGTGGATTTGCAGAACTTGCGGGATGCTTACATAAGTTGAAAAGCTCAGAAAAACAGGTAGGGACACCGCTAGAAGAAGATTTATCTAGCTGGGGACATCATTTTTGCTCTACTTCAGTACCTGATGCTATTCTCCAAGCATCTGCAGGTGATGAGGTGACATTTGTATTCTCGAACCAAGTTGATGGGAAGCTAGTACCTATTGAATCAGTGTCATGCGCAAAGAAACGGAAAGGCGAGGACTATATGAAAATGAAGGATCACCAGAACCAAAAATCATTGTTAGTTTCTCTACATAGAAAACCTTTACATCCTGTTTGTACTAATAGCACTGATAATTGA 2682 41.83 MVRRNLLFLCPSSECERYYPNLSMEEDEEALSISSPGDSTTQDHSSAGDEGFGDEDSENEESITLSPQSVQDRKSKNVDALLKGNLVVTRQSLLPRVLLVTEGAEGCRKPFKPPCSNGYDEKNNQLTRRLWARKRFIPWGSSRPVSVAITNQVKLANDVEKDLEEESATLPAGIDPLILWQPEESEITASNVEPISVDPLLVCYLRPHQREGVQFMFDCVSGLHKDENIFGCILADDMGLGKTLQSISILYTLLRQGLDGKPMLKKAIIVTPTSLVSNWEAEIKKWIGERVQVIALCESARSDVVSGIENFINPRSSLQVLIVSYETFRMHSSKFSHTEACDLLICDEAHRLKNDQTLTNRALASLSCKRRILLSGTPMQNDLEEFFSMVNFTNPGILGEVTYFRRYYEAPIICGREPTATEEEKSLGVERTAELSAKVNKFILRRTNALLSNHLPPKIVEVVCCRLTPLQSDLYKHFIQTKNVKRVINEEIKQSKILAYITALKKLCNHPKLIYDTIKSGSPGTSGFEDCMRFFPSEMISGRSGTWTGGDGAWVELSGKMHVLARLLAHLRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGTTSISKRQKLVNSFNDVAKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQRKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQVDQSKSSTNQMNFLSIEDLRDLFSFPDTVRSEIHENMNCVRCQNCNDMVEDTDKNQIMNETCQSDQESSDIGGFAELAGCLHKLKSSEKQVGTPLEEDLSSWGHHFCSTSVPDAILQASAGDEVTFVFSNQVDGKLVPIESVSCAKKRKGEDYMKMKDHQNQKSLLVSLHRKPLHPVCTNSTDN 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25777111 25796537 + Bma021463.1 Bma05g00518 82602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00518 893 Pfam SNF2-related domain 208 514 IPR000330 GO:0005524|GO:0140658
Bma05g00518 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 450 758 IPR027417 -
Bma05g00518 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 446 IPR027417 -
Bma05g00518 893 MobiDBLite consensus disorder prediction 33 47 - -
Bma05g00518 893 SMART ultradead3 201 404 IPR014001 -
Bma05g00518 893 SMART helicmild6 590 674 IPR001650 -
Bma05g00518 893 MobiDBLite consensus disorder prediction 26 71 - -
Bma05g00518 893 Gene3D - 179 445 IPR038718 -
Bma05g00518 893 Pfam Helicase conserved C-terminal domain 565 673 IPR001650 -
Bma05g00518 893 Gene3D - 468 737 - -
Bma05g00518 893 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 71 850 - -
Bma05g00518 893 CDD SF2_C_SNF 557 685 - -
Bma05g00518 893 CDD DEXHc_RAD54 205 446 - -
Bma05g00518 893 Gene3D - 446 759 IPR027417 -
Bma05g00518 893 PANTHER SNF2/RAD54 FAMILY MEMBER 71 850 - -
Bma05g00518 893 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 223 396 IPR014001 -
Bma05g00518 893 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 563 721 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00518 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - jre:108988898 1372.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00518 Bma-Chr5:25777111 Bma09g00440 Bma-Chr9:38289177 4.40E-73 dispersed
Bma07g00991 Bma-Chr7:38704716 Bma05g00518 Bma-Chr5:25777111 2.40E-37 dispersed
Bma12g00550 Bma-Chr12:22902641 Bma05g00518 Bma-Chr5:25777111 3.11E-29 dispersed
Bma05g00518 Bma-Chr5:25777111 Bma07g00277 Bma-Chr7:3445040 1.05E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g427 Blo02g00835 . . . . . Bma05g00518 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1099 . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00442 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009997 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57313 PF00176 SNF2_N 1.30E-54 CL0023 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00518 Bma_Chr05 FPKM 10.105491 10.169763 11.926266 13.138039 1.185939 0.594824 0.641574 0.0 0.0 0.2392