Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00525 ATGGCTACCTCTGCTCACTCAATCCTCCGTACGCCGTCGATTCGAGATTCCTCTGTTTCTCTTTCCTCCAAGTTGCCTGTCTTTTCCCCACTATCCGTTCGTTTTCGCTCTCGCCGAACTCGATCGCACGTCTTCGTTGTTGTGTCGGCAGGTCTCGATGCCAAGCCGACGGTTCTGGTTGCGGAAAAGCTCGGTGAAGCTGGTCTTTCGCTTCTCAAGGACTTTGCTAATGTTGATTGTTCGTATAATCTGAGTTCGGAGGAGCTGTGCACTAAGATCTCGCTCTGTGATGCGCTTATTGTGCGTAGTGGAACAAAGGTCAGTCGCGAAGTGTTTGAATCTTCTGGAGGGAGATTGAAGGTGGTTGGGAGGGCTGGGGTTGGTATTGACAATGTGGATCTCGCGGCGGCGACTGAGCATGGTTGCTTGGTGGTGAATGCGCCGACTGCCAATACTGTCGCAGCTGCGGAGCATGGGATCGCTCTCTTGACTGCTATGGCGAGGAACGTCGCCCAAGCCGATGCGTCTGTTAAAGCTGGAAAGTGGGAACGAACCAAGTATGTTGGTGTATCCCTCGTCGGAAAAACACTGGCTGTTATGGGTTTTGGGAAAGTTGGAACAGAAGTTGCTCGACGTGCAAAGGGACTTGGTATGCACGTGATTGCACATGACCCATATGCTCCAGTTGATCGGGCCCGTGCCATAGGTGTGGAGCTTGTGAGCTTTGACGAAGCTATTGCAACTGCAGACTTCATCTCTTTGCACATGCCTCTGACAGCCTCTACTTCAAAAATTCTTAATGATGAAACTTTTGCTAAAATGAAGAAAGGAGTTCGTATAGTCAATGTTGCTCGGGGTGGGGTAATTGATGAAGAAGCTCTAGTGAGGGCGCTAGATGCTGGAACTGTTGCACAGGCAGCTCTTGATGTTTTCACAGAGGAACCACCTCCAAAAGATAGCAAGTTGGTTCTGCACGAGAAAGTTACTGTAACACCTCACCTTGGAGCCAGTACCATGGAAGCACAGGAAGGTGTGGCTATTGAAATTGCTGAAGCTGTAGTTGGAGCCTTGAGAGGGGAGCTTGCAGCAACTGCAGTTAATGCCCCCATGGTTCCTGCAGAGGTCTTAACTGAACTGAAGCCGTATGTTTTACTGGCTGAGAAATTGGGAAGACTGGCTGTCCAACTTATAGCCGGAGGAAGCGGTGTTAAAACTGTGAAAGTGACTTATGGTTCACAGAGAGCTCCTGATGATCTTGACACCAGGCTTCTCCGTGCCATGATAACAAAGGGTCTGATTGAGCCGATATCCAGTGTTTTCGTGAACTTGGTCAATGCTGATTTTACTGCTAAACAGCGGGGACTGAGAATAACTGAAGAGCGAATTGTTCTAGATGGATCCCCAGAAAGTCCACTGGAGTTTGTTCAAGTTCAGATCGCCAATGTGGAGTCGAGATTTGCAAGTGCAATATCAGATTCAGGAGAGATAACGGTTGAAGGACGTGTAAAGGATGGAGTTCCTCACCTGACAAAGGTTGGATCTTTTGACGTTGACGTGAGTTTGGAAGGTAGTATTATTCTCTGTAGACAGGTTGATCAGCCAGGTATGATTGGAAAGGTGGGGACCATTTTAGGAGAGGAGAATGTAAATGTCAGCTTCATGAGCGTAGGCAGAATCTCTCCAAGGAAGCAAGCTCTAATGGCTATAGGAGTGGATGATCAACCCAGCAAGGAATCCTTGAAGAAAATAGGCGAAATTTCAGCAGTCGAGGAGTTTGTCTTCCTCAAATTG 1791 48.3 MATSAHSILRTPSIRDSSVSLSSKLPVFSPLSVRFRSRRTRSHVFVVVSAGLDAKPTVLVAEKLGEAGLSLLKDFANVDCSYNLSSEELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVKAGKWERTKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMHVIAHDPYAPVDRARAIGVELVSFDEAIATADFISLHMPLTASTSKILNDETFAKMKKGVRIVNVARGGVIDEEALVRALDAGTVAQAALDVFTEEPPPKDSKLVLHEKVTVTPHLGASTMEAQEGVAIEIAEAVVGALRGELAATAVNAPMVPAEVLTELKPYVLLAEKLGRLAVQLIAGGSGVKTVKVTYGSQRAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRITEERIVLDGSPESPLEFVQVQIANVESRFASAISDSGEITVEGRVKDGVPHLTKVGSFDVDVSLEGSIILCRQVDQPGMIGKVGTILGEENVNVSFMSVGRISPRKQALMAIGVDDQPSKESLKKIGEISAVEEFVFLKL 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26489121 26491958 - Bma031191 Bma05g00525 82609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00525 597 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 160 335 IPR006140 GO:0051287
Bma05g00525 597 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 58 367 IPR006139 GO:0016616|GO:0051287
Bma05g00525 597 SMART AdoHcyase_NAD_2 185 354 IPR015878 -
Bma05g00525 597 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 274 290 IPR029753 -
Bma05g00525 597 TIGRFAM PGDH: phosphoglycerate dehydrogenase 58 595 IPR006236 GO:0004617|GO:0006564
Bma05g00525 597 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 197 224 IPR029752 -
Bma05g00525 597 SUPERFAMILY ACT-like 515 593 IPR045865 -
Bma05g00525 597 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 55 184 - -
Bma05g00525 597 SUPERFAMILY Serine metabolism enzymes domain 373 519 IPR029009 -
Bma05g00525 597 Pfam ACT domain 525 583 IPR002912 -
Bma05g00525 597 CDD ACT_3PGDH-xct 526 597 - -
Bma05g00525 597 Gene3D - 151 333 - -
Bma05g00525 597 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 378 467 IPR045626 -
Bma05g00525 597 PANTHER FORMATE DEHYDROGENASE 1 34 592 - -
Bma05g00525 597 Gene3D - 372 523 IPR029009 -
Bma05g00525 597 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 336 IPR036291 -
Bma05g00525 597 CDD PGDH_4 58 360 - -
Bma05g00525 597 ProSiteProfiles ACT domain profile. 525 597 IPR002912 -
Bma05g00525 597 Gene3D - 524 597 - -
Bma05g00525 597 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 34 592 - -
Bma05g00525 597 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 245 267 IPR029753 -
Bma05g00525 597 Gene3D - 60 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00525 K00058 serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] - csv:101221689 991.875
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00525 Bma-Chr5:26489121 Bma10g00658 Bma-Chr10:9460029 0 dispersed
Bma05g00525 Bma-Chr5:26489121 Bma10g00698 Bma-Chr10:10500181 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g618 Blo02g00840 . . Bda08g00769 . . Bma05g00525 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00509 Cmo16g00367 . . . . Cpe14g00284 Cpe01g00426 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001181 3 2 4 3 3 1 4 2 2 2 2 2 3 2 2 4 2 6 4 2 2 2 3 2 2 2 2 3 2 3 78