Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00538 ATGAAGGGTAGGTCTAACCGCCTTCAAAGTTCGGACCCTCCGGAAGATTGGGTCAATGGGTCCTGGACTGTGGATTGTGTTTGTGGTGTTAATTATGATGATGGAGAGGAGATGGTGAATTGTGATGAGTGTGGAGTGTGGGTGCACACACGTTGTTCACGTTATGTGAAAGGAGATGATATTTTTGTATGTGACAAATGCAAAGGCAAGATCGCTTTTAATGATAGCGAGGAGACAGAGGTTGCACAGCTTTTGGTTGAACTTCCTACTAAGACCATGAGAATGGAGAGTAATTGTGCCTCAAATAAGCCTCCCCGTCATCCGCGCAGGCTTTGGACTGAGAAACCAATGGAGGAGAGGGTGCATGTCCAAGGAATTCCAGGCGGTGAGCCTACTTTATTTAGAGGATTATCATCAGTATTCACTCGAGAGCTATGGAAGTCTAGTGGGTACGTTCCCAAAAAGCTTAACTTTCAATATAAGGAGTTTCCTTGTTGGGATGAGAAGTTAGAAACTGGAAGTAAAAATGACGAAGAAAATGATAATAACGGTGCTGGCGTTCTCTTTTCTTTATCAAAAGAGACTGTATTTCCTACCCCAGTTGCAACTTTGACTGATTTGAGACGCAATGTCGATAATGAAGTTTGTGATAGGAAGGCCTTCTTGAAAGAAAGTAATAAGTCGGAAATTGACGATATAGATATTAAGCAGGGTATGGAAAAAGAAAGAAGCATCCTTCAGCCTGTTTTACTACATTCAGGTAGTGGAAAGAAGGAGGATCTTGTCACAACTAGGGATCGGAGTGGTAAGAGGAAGGCCAGAGCTTCTGACAAGAAAGATGATACGAAGAAAATCATATCACATTCAGCTAAAACTGTGCTTACACTATCACGTGAGGAGAAACAATCGGAACTTCATGAAGGCAGAGGTCAAAATAATTCCAAGATTGACAGTCAAAGTACTAAGAACAATATTTTGCAGGAATCAGTAGTTTGTGGGCCTGTATTAGATGTGCCTGCTGCAACAGATAAAAATCTTGAACAGTCCAAAAATATCAAATCACCTCATGAGCTATCTTCTGGTGCCTTCTCTTCTGTAATGTATGAGAATAATCTTTTAAATGGATCTGAAAGAAAGGAAGAGAAGGCTGGCTGTCAAATTCCACTAGTGGTAATTAAGAGTTCTTCCAAAACTGAGAGTCCTGGATCCTCACTGTTGGAACGAACTGATACTGGAAAATTATCTATTCAACAGAAGGGAGATGATGCAATGATTAATGTTTCAGATGATAGTGTTAGAGGTTCAGCTCGATTTGTTGCCAAGTCTTCTGTTCAAGATCTATCTAGCGCCACACCAGAGGTAAAGGGCTCTATTGTTCTTGAAGATTTTGATGGTGATGTATCCTTGAACTCGGCACAAGCGAAAATGGAACTGCAGCATGATAGGGAATCACCAAACATCCAGTCTTCTCTTGGGAATGCAAAAGAACTGCGGATACTGCCTGATCAGATGTCAGAGAATTTAAAAGTGAATGATGCTGCACTTTGCAGTTCGCAATCTGATGGCCACAAGATGCAAGAAGTTGATAAAGGTTCTGAAGCAGTAAGTGATTATTGTACTGAACAAGTAGATGGCCAATCAAGTGGTCCTTGTCACTATAAGGGAGAATTAGATTGCTCAAAAGGTTTCAAGGCAGTGGAAAGTTCTTCAGACTCCAAAAAGGGTTCTTTGTTTGCTGCAGAGCAATCAAAATCTGGTGGAACTGTTTTGAACTCACAACCCGTGCCGAATCATAAAATCGCTTTGCCCATTGGAAAATCATCACCGGTGCCAAGTACAATTGTAATCACTACTAAATCATCTTCTGGTAGCATTAAACCGGTAGATGTTACTAATCCTCCTTTGACTTCCCAGCAGAGGGTAATATCTGGTAGTAGTGCTAGTGGTAGGAAAGAAGGTAACTCGAGTGATGTAATTAGGGATGAAGAGAGGGAAGAAAAACCTAGGAAAACAATAAAAGAGCAACCAAAACCAGATGCCAATTCTTCTCCTAAAATATTGATGTCTAACAGAACATCACAAGATTTTGTTTCCAAGAGAAGTTTGTCAGGATCAAAAGATTTTGTAGTTTATTCCTCTTCCAAAGCATCCTCAGCAAATATTATCAAAGCTAATACTGGGTCTGGAGAGTCCAAGGGATCACAGCGCAATCAGAAGCCTCTACATGCTCATAACAAGACTGCTAGTTCAGGTTTGCCTCAGAAAGGTGAAAAGTCTAACCAGACCCACATTCCTGCTTCATCTAAGGTTACTCAGAACCATCCGTACCCTCCTGTGCCTTCAAATATTCATGCGAATCTCAGTGATGAAGAGCTTGCTTTGCTTTTGCATCAAGAACTCAACAGTTCTCCAAGAGTACCTCGCGTCCCTCGTTTACGCCACTCAGGTAGCTTACCACAATTAGCCAATCCAAGTGCGACAAGCATTCTGGTAAAGCATTCATCAAGCTCTGGAGTAAAAGATCTCGGATCGGTTTCTAGAAGAAAAGTGAAAGATGTTTCAAAGGATTCAATTCGAAATTGTCTAGACCCTGATGATGAAGCTAAGAAGAGTGCAAGACTACCACATTCTTCGCCGGATCAGAGAAAAAATGTTGCATCGCCTGCTACTGATGCTTCAATGAAGAGGGATGACAACAGATCGTCTCCTAGAATGGTAGTTAGGAAGAACATTTCATCAGCCTCTACAACTGCAAGTAGTGGCCCTTCATCATCAACAGAAGTTAATGATCGTAACGTGTCATCTATACGTAATTCACCAAGAAACACTTCTGATGAAGATACAGGAACAGTTGGGGGTCCTGTCAATCGCACTTTGCCTGGGTTGATTGATGAGATCCTGAGCAAAGATAGGCGCCTGACATATGAAGAACTATGTAATGCAGTCTTGCCGCATTGGCATACCTTAAGGAAACATAATGGGGATAGGTATGCTTACTCGAGTCATTCACAAGCTGTTTTGGATTGTCTGAGGAACAGATATGAGTGGGCACAGTTGGTTGACCGTGGTCCCAAAACAAATTCAAGTAGGAAAAGACACAAACTTGATGCAGATGAATCTGAAGATAGTGAGAAAGGAAAAGGGAGGACAACAAGAGATGTTGAGAGTAAAAGTCTCGATTCGCATAAAGAGGAATTTCCAAAGGGCAAGAGGAAAGCGAGAAAGCGGAGGCGACTGGCTCTTCAAGGAAGAGGAGTAAAAGATTTGAGGAAAAGGAGGAGGACTGATATACTTGATGATGAAGTCGGGCAGGTCACAATCTCGAGTGAGGAAAGCATTTTCAGCGAGGACGAGATTCGAGATGGGGAAGGATGTCGACAAGGAAGTGAGGCATCTGACAGTTCAGAGGAGGCAGGGAACTTGTAG 3426 42.09 MKGRSNRLQSSDPPEDWVNGSWTVDCVCGVNYDDGEEMVNCDECGVWVHTRCSRYVKGDDIFVCDKCKGKIAFNDSEETEVAQLLVELPTKTMRMESNCASNKPPRHPRRLWTEKPMEERVHVQGIPGGEPTLFRGLSSVFTRELWKSSGYVPKKLNFQYKEFPCWDEKLETGSKNDEENDNNGAGVLFSLSKETVFPTPVATLTDLRRNVDNEVCDRKAFLKESNKSEIDDIDIKQGMEKERSILQPVLLHSGSGKKEDLVTTRDRSGKRKARASDKKDDTKKIISHSAKTVLTLSREEKQSELHEGRGQNNSKIDSQSTKNNILQESVVCGPVLDVPAATDKNLEQSKNIKSPHELSSGAFSSVMYENNLLNGSERKEEKAGCQIPLVVIKSSSKTESPGSSLLERTDTGKLSIQQKGDDAMINVSDDSVRGSARFVAKSSVQDLSSATPEVKGSIVLEDFDGDVSLNSAQAKMELQHDRESPNIQSSLGNAKELRILPDQMSENLKVNDAALCSSQSDGHKMQEVDKGSEAVSDYCTEQVDGQSSGPCHYKGELDCSKGFKAVESSSDSKKGSLFAAEQSKSGGTVLNSQPVPNHKIALPIGKSSPVPSTIVITTKSSSGSIKPVDVTNPPLTSQQRVISGSSASGRKEGNSSDVIRDEEREEKPRKTIKEQPKPDANSSPKILMSNRTSQDFVSKRSLSGSKDFVVYSSSKASSANIIKANTGSGESKGSQRNQKPLHAHNKTASSGLPQKGEKSNQTHIPASSKVTQNHPYPPVPSNIHANLSDEELALLLHQELNSSPRVPRVPRLRHSGSLPQLANPSATSILVKHSSSSGVKDLGSVSRRKVKDVSKDSIRNCLDPDDEAKKSARLPHSSPDQRKNVASPATDASMKRDDNRSSPRMVVRKNISSASTTASSGPSSSTEVNDRNVSSIRNSPRNTSDEDTGTVGGPVNRTLPGLIDEILSKDRRLTYEELCNAVLPHWHTLRKHNGDRYAYSSHSQAVLDCLRNRYEWAQLVDRGPKTNSSRKRHKLDADESEDSEKGKGRTTRDVESKSLDSHKEEFPKGKRKARKRRRLALQGRGVKDLRKRRRTDILDDEVGQVTISSEESIFSEDEIRDGEGCRQGSEASDSSEEAGNL 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28923044 28929228 + Bma021501.1 Bma05g00538 82622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00538 1141 MobiDBLite consensus disorder prediction 1023 1141 - -
Bma05g00538 1141 MobiDBLite consensus disorder prediction 258 287 - -
Bma05g00538 1141 MobiDBLite consensus disorder prediction 722 779 - -
Bma05g00538 1141 MobiDBLite consensus disorder prediction 844 877 - -
Bma05g00538 1141 MobiDBLite consensus disorder prediction 722 784 - -
Bma05g00538 1141 MobiDBLite consensus disorder prediction 905 951 - -
Bma05g00538 1141 MobiDBLite consensus disorder prediction 567 701 - -
Bma05g00538 1141 MobiDBLite consensus disorder prediction 829 959 - -
Bma05g00538 1141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 72 IPR013083 -
Bma05g00538 1141 MobiDBLite consensus disorder prediction 805 824 - -
Bma05g00538 1141 MobiDBLite consensus disorder prediction 567 595 - -
Bma05g00538 1141 MobiDBLite consensus disorder prediction 256 320 - -
Bma05g00538 1141 MobiDBLite consensus disorder prediction 654 676 - -
Bma05g00538 1141 PANTHER UNCHARACTERIZED 1 1138 - -
Bma05g00538 1141 MobiDBLite consensus disorder prediction 682 701 - -
Bma05g00538 1141 MobiDBLite consensus disorder prediction 1113 1127 - -
Bma05g00538 1141 MobiDBLite consensus disorder prediction 1082 1100 - -
Bma05g00538 1141 ProSitePatterns Zinc finger PHD-type signature. 26 67 IPR019786 -
Bma05g00538 1141 MobiDBLite consensus disorder prediction 294 311 - -
Bma05g00538 1141 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SET-26-RELATED 1 1138 - -
Bma05g00538 1141 SUPERFAMILY FYVE/PHD zinc finger 14 70 IPR011011 -
Bma05g00538 1141 MobiDBLite consensus disorder prediction 610 653 - -
Bma05g00538 1141 MobiDBLite consensus disorder prediction 1030 1067 - -
Bma05g00538 1141 SMART PHD_3 25 68 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00538 - - - zju:107403796 1126.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00343 Bma-Chr4:2790408 Bma05g00538 Bma-Chr5:28923044 2.00E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g256 . . . Bda08g00752 Bpe05g00387 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0587 Cone12ag0579 . . . . . . . . . . . . Bma05g00538 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004431 2 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 5 4 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00538 Bma_Chr05 FPKM 14.65203 15.310473 37.969788 40.112926 22.863573 23.934914 27.710125 28.596445 30.85581 31.920017