Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00539 ATGACAATTCCTAGTTCGGGTTCAATGATGGAAGATGGAGGGCCGAGTTGCTTGCCGCTTACTCCTGAGGAAGAGAATCGCATCTTTACAGAATTAATTCGCGAATCTGAGTCTAATTTGGAAGATGGAAATTTCTACTACGTTATTTCCAACAGATGGTTTACAAGGTGGACGAAGTATGTTGGTCTATTTACCAAGGAATATTCAATGGATGAGCAGTCTTCTGATACTGAAGCATTAGATGTCATTCCATCAAAGTTAGCTGACAGACCTGGACCTATTGATAACTCTGATATTATTTTAGATGGAAAAATTTTCGGGAGCAATGATTTAGAGCTCCGAAAGATGCTGGAGGAAGGGCTGGACTATGTTTTAGTTCCTCAATCAGTTTGGCAAAAGCTTTTAGATTGGTACACTGGAGGACCGGCTTTACAGAGAAAGTTGATTGCACAAGATGTTCACAAGAACTTTGATGTGGAGGCTACTGTTGGTGAGCTTCTTGAGAACGTATGCACACTTAAAGGAATAGAAAGGGAAAAGATGAGTCTGTGGGACTATTTCAACAAGCAAAAACAGTCAGTATTGGATTGTTCAAGTCAAACTCTCGAGGAATTGAACTTACAGATGGATCAAGATGTTCTTCTTGAAGTAAAGTTCGAGGGACGTTCATCTGAGAATTCTATGGATTCAACAGGAAATGAGTTTGCTTTGGTAGCTATAGAGCCTTCCCGTTCACCTTTGTCAATTGCTGGGGGGCCTGTTATGTCAAATGGCCATTCAACTGGAAATAGTCTATATCAGGGACATTCTATTGGTTCATCGGGTATTGAAACAGATGATTTAACCAATCATGAGATAAAGAAAGAGAAGGGAGGTTTGGCTGGGTTGCAGAATCTGGGTAATACATGTTTCATGAACAGTGCAATTCAATGTCTAGTCCACACACCTCCTGTTGTTGAGTATTTCTTGCAAGATTACTCTGAGGAGATTAACGTTGAAAATCCGTTAGGGATGCGCGGGGAGCTTGCTCTTGCATTTGGTGAACTGTTGAGGAAATTATGGTCACCGGGGCGAACTGCAATTGCTCCACGCGTATTTAAGGGAAAATTAGCTCGCTTCGCTCCTCAATTTAGTGGTTACAACCAGCACGATTCTCAAGAACTCCTTGCCTTCTTGTTGGATGGACTGCATGAAGATTTGAACCGTGTGAAGCAAAAGCCTTACATTGAAATGAAGGATTCTGATGGTCGTGCAGATGAGGAAATTGCTGATGAGTGTTGGAGATACCACAAAGCAAGGAATGATTCATTGATTGTTGACGTTTGCCAAGGTCAATATAAATCAACACTGGTCTGTCCAGAATGTGGCAAAATCTCAATAACATTTGATCCTTTTATGTACTTATCATTGCCACTACCGTCAACTCTGACTCGGTCCATAACAGTGACTATATTTTATGGCGATGGTAGTGGTCTTCCAATATCATACACTGTGACTGTACCAAAACATGGTTCCTGTAAAGATCTATCCACAGCTTTAGGTGCTGCTTGTTGCTTGAAAAATGATGAAATCCTTCTTCTTGCAGAGATTTATGATCATCGTGTGTATCGATATTTTGAGAATCCTTTTGAGCAGCTGACTTCTATAAAAGATGAAGAATGTATTGTAGCCTACCGCTTCTTTGAAAGAGATGTGGGAAGATCAAAACTAGAGATTATTCATCGATGTCAGGACAATAGTTCATCAGATCGTTTGAAGGGCATTGAGAGAAAGCTTTTTGGAACTCCACTTGTTACCTTTTTAGGAGAAGAGCAACAGGCGGCAGCTGATATCAATGCATTTGTCTCCAAAATTCTCTCTCCTATGAGAAGAACATATTCTACAAACAAGATGCTCAGCAGCAAGGAAAATGGAGTTGTTTCAGAGATGGTTATTGAACCTTTAACCAGCTGCAATGGTCAAACTGAGCCGATGGATCAATCAACCGATGAAAATCACATAGAGTATACATCTGATGACAAATTACCTTTTCAGCTTCTTTTGACGGATGAAAGGGGTTTGACCGGCAAACCTATCATGAAGGACTCTCTCGTGAAACCTAATAAGCTGGTAAAGGTTTTTCTAGACTGGACCCAAAAAGAACATGAATTTTATGATGCAAGGTACCTTAAGGATCTTCCAGTTGTCTATCGGACAAGGTTTGTGAAGAAAACACTGGAGGAAGCTATCTCTTTGTTTTCATGCTTGGAGGCATTCCTGAGTGAAGAACCTTTAGGTCCTCATGACATGTGGTACTGTCCAAGGTGCAAAGAGCATAGGCAGGCCTCTAAGAAGCTAGACTTGTGGAAGCTGCCGGAGATTATTGTATTTCACTTGAAACGATTCTCATTCAGCAGATATCAGAAGACAAAGCTGGACACTTTTGTTGATTTTCCTATTCACAATCTTGACTTGAGCAAATATGTGAAAAGCAGAGATGGAACATCTCATGTGTATGATCTATATGCCGTCAGCAACCATTATGGTGGTCTAGGAGGAGGACACTACACTGCCTATGCCAAGTTGATAGATGAGAATAGATGGTATCATTTTGATGACAGTCATGTTTCTGTTGTTGGAGAATCCGATATCAAGACATCAGCTGCTTACTTGTTGTTTTATCAAAGAACGAGCAAGACACGGGCATGCATGGGCGAGACATCATTGTCCAATGGGCGTTAA 2721 40.9 MTIPSSGSMMEDGGPSCLPLTPEEENRIFTELIRESESNLEDGNFYYVISNRWFTRWTKYVGLFTKEYSMDEQSSDTEALDVIPSKLADRPGPIDNSDIILDGKIFGSNDLELRKMLEEGLDYVLVPQSVWQKLLDWYTGGPALQRKLIAQDVHKNFDVEATVGELLENVCTLKGIEREKMSLWDYFNKQKQSVLDCSSQTLEELNLQMDQDVLLEVKFEGRSSENSMDSTGNEFALVAIEPSRSPLSIAGGPVMSNGHSTGNSLYQGHSIGSSGIETDDLTNHEIKKEKGGLAGLQNLGNTCFMNSAIQCLVHTPPVVEYFLQDYSEEINVENPLGMRGELALAFGELLRKLWSPGRTAIAPRVFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSDGRADEEIADECWRYHKARNDSLIVDVCQGQYKSTLVCPECGKISITFDPFMYLSLPLPSTLTRSITVTIFYGDGSGLPISYTVTVPKHGSCKDLSTALGAACCLKNDEILLLAEIYDHRVYRYFENPFEQLTSIKDEECIVAYRFFERDVGRSKLEIIHRCQDNSSSDRLKGIERKLFGTPLVTFLGEEQQAAADINAFVSKILSPMRRTYSTNKMLSSKENGVVSEMVIEPLTSCNGQTEPMDQSTDENHIEYTSDDKLPFQLLLTDERGLTGKPIMKDSLVKPNKLVKVFLDWTQKEHEFYDARYLKDLPVVYRTRFVKKTLEEAISLFSCLEAFLSEEPLGPHDMWYCPRCKEHRQASKKLDLWKLPEIIVFHLKRFSFSRYQKTKLDTFVDFPIHNLDLSKYVKSRDGTSHVYDLYAVSNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSVVGESDIKTSAAYLLFYQRTSKTRACMGETSLSNGR 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29051357 29061238 + Bma021502.1 Bma05g00539 82623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00539 906 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 832 849 IPR018200 GO:0004843|GO:0006511
Bma05g00539 906 SMART dusp 39 152 IPR006615 GO:0004843
Bma05g00539 906 MobiDBLite consensus disorder prediction 1 20 - -
Bma05g00539 906 Gene3D - 21 148 IPR035927 -
Bma05g00539 906 Gene3D - 149 223 - -
Bma05g00539 906 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 160 - -
Bma05g00539 906 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 15 160 - -
Bma05g00539 906 ProSiteProfiles DUSP domain profile. 20 149 IPR006615 GO:0004843
Bma05g00539 906 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 294 890 IPR028889 -
Bma05g00539 906 Gene3D Cysteine proteinases 277 490 - -
Bma05g00539 906 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 174 892 - -
Bma05g00539 906 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 174 892 - -
Bma05g00539 906 Pfam Ubiquitin carboxyl-terminal hydrolase 295 887 IPR001394 GO:0004843|GO:0016579
Bma05g00539 906 Gene3D Cysteine proteinases 603 897 - -
Bma05g00539 906 SUPERFAMILY Cysteine proteinases 292 889 IPR038765 -
Bma05g00539 906 Pfam DUSP domain 43 149 IPR006615 GO:0004843
Bma05g00539 906 CDD Peptidase_C19R 736 888 - -
Bma05g00539 906 SUPERFAMILY DUSP-like 17 149 IPR035927 -
Bma05g00539 906 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 295 310 IPR018200 GO:0004843|GO:0006511
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00539 - - - mcha:111023427 1288.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00539 Bma12g00420 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00539 Bma-Chr5:29051357 Bma11g00255 Bma-Chr11:2237480 0 dispersed
Bma01g01626 Bma-Chr1:42673539 Bma05g00539 Bma-Chr5:29051357 2.45E-09 transposed
Bma09g00418 Bma-Chr9:34893807 Bma05g00539 Bma-Chr5:29051357 2.61E-09 transposed
Bma10g00244 Bma-Chr10:2214556 Bma05g00539 Bma-Chr5:29051357 0 transposed
Bma12g00420 Bma-Chr12:9459698 Bma05g00539 Bma-Chr5:29051357 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g257 . . . Bda08g00751 Bpe05g00390 . . . Cmo06g00541 . Cma02g00946 Cma15g01323 Car02g00695 Car15g01188 . . Cpe05g00767 . . . . . . . . . . . . . . . . . . . Csa05g00158 Chy09g01340 . . . . . . . Bma05g00539 Bma12g00420 . Cmo02g00955 Cmo15g01386 Cma06g00538 . Car06g00476 . Cpe08g00954 . Bhi12g00079 . . . . . Lcy12g1510 Cla01g00140 Cam01g0145 . . Clacu01g0140 Cmu01g0140 Cre09g2366 Lsi09g00131 . . Cme09g01887
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005583 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00539 Bma_Chr05 FPKM 4.184739 5.809719 8.085666 8.335366 6.673872 7.992945 8.447064 7.099472 8.57133 6.422344