Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma05g00542 | ATGAGATCGGCAGAGTATGTTCGAAAAGATTCCAGGTTTGGCGGAATGTTCAGAAACTCCATGGAAGACTACAATGTCTTGATCATGAAGAAAATTATGGAGGTTTACAAGGGTTTTGAAGGGCTAACATCCTTAGTGGACGTTGGTGGTGGAAATGGTACTGTCCTCCGTATGATCACTTCCAAATACCCTCTCTTAAGGGGCATCAACTTTGATTTACCTCATGTCATCCAACAGTCCTATCCTGGAAACGAGAACATAGGAGGCGATATGTTCGTGAGTATTCCGAAAGGGGATGCTATTTTCATGAAATGGATATTGCACAACTGGGATGATGAGAGCTGCCTGAAGCTATTGAAAAATTGCCACCAAGCATTACCAGAAGAAGGGAAAGTAATTGTTGTTGATATGGTGATCCCGGAAGGTGGTATCGACAAGAGCCTGTTTCAGTTCGATCTGTTCCGGATGAGCATGAACCCAGACGGGAAGGAAAGGATGCATCGAGAGCTCCAAACTTTGGGAGAAGCCACCGGCTTTTCAGGCGTTCGAGTGGCGGCTGCCGCCTTCAACTTCTCTGTGGTAGAGTTCTGTAAGTCCACCTCTTGA | 606 | 45.87 | MRSAEYVRKDSRFGGMFRNSMEDYNVLIMKKIMEVYKGFEGLTSLVDVGGGNGTVLRMITSKYPLLRGINFDLPHVIQQSYPGNENIGGDMFVSIPKGDAIFMKWILHNWDDESCLKLLKNCHQALPEEGKVIVVDMVIPEGGIDKSLFQFDLFRMSMNPDGKERMHRELQTLGEATGFSGVRVAAAAFNFSVVEFCKSTS | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 29493359 | 29494443 | - | Bma021507.1 | Bma05g00542 | 82626 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma05g00542 | 201 | Gene3D | Vaccinia Virus protein VP39 | 14 | 186 | IPR029063 | - | |
| Bma05g00542 | 201 | Gene3D | - | 4 | 32 | IPR036388 | - | |
| Bma05g00542 | 201 | PANTHER | CAFFEIC ACID 3-O-METHYLTRANSFERASE 1-LIKE | 1 | 199 | - | - | |
| Bma05g00542 | 201 | Pfam | O-methyltransferase domain | 5 | 180 | IPR001077 | GO:0008171 | |
| Bma05g00542 | 201 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 1 | 198 | IPR016461 | GO:0008168 | |
| Bma05g00542 | 201 | PANTHER | O-METHYLTRANSFERASE | 1 | 199 | IPR016461 | GO:0008168 | |
| Bma05g00542 | 201 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 5 | 195 | IPR029063 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma05g00542 | Bma-Chr5:29493359 | Bma10g01323 | Bma-Chr10:46866691 | 6.17E-66 | dispersed | |
| Bma05g00542 | Bma-Chr5:29493359 | Bma05g00546 | Bma-Chr5:29819752 | 4.05E-148 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma05g00542 | K13066 | - | qsu:112039311 | 265.774 |