Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00546 ATGGAGGATGGAAATTCTCCCAATTCCGATGGAAACTCCGATTGTCTGTCTACCTACGCCATGCAAATTGCAACCTCTTCGGTTCTTCCTATGGTGTTCAAATCAGCGATAGAATTAGGGGTGCTCAACGTCTTAAAGGCTGAAGGCGACAGCGCTCTCCTCTCCTCTTCAGAAATTGCGTCGAAGCTTCCCGCTTCGAATAACCCCGAAGCCTCCTCCGTTCTGGAACGTATTCTTCGCCTCCTGGCTTCTCACTCCATTCTCGTCTCCTCTGTACGATCGAGTTCTGGGGATGGTTTTCCTCTTCGGGTTTACGGTTTAGCTCCTGTCTCCCACTACTTCATTCCCAATCAGGATGGGGTTTCACTGGCTTCCCTTTTGCATACTATCCAAGATAGTGTTACGATTGATGCCTGGTTTCATTTAAGAGATGCAGTTTTAGAAGGAGGACTTCCTTTTCAGAGAGCCCACGGGATGAGAGCGGCAGAGTATGTTCGAAAAGATTCCAGGTTTGGCGGAATGTTCAGAAACTCCATGGAAGACTACAATGTCTTGATCATGAAGAAAATTATGGAGGTTTACAAGGGTTTTGAAGGGCTAACATCCTTAGTGGACGTTGGTGGTGGAAATGGTACTGTCCTCCGTATGATCACTTCCAAATACCCTCTCTTAAGGGGCATCAACTTTGATTTACCTCATGTCATCCAACAGTCCTATCCTGGAAACGAGAACATAGGAGGCGATATGTTCGTGAGTATTCCGAAAGGGGATGCTATTTTCATGAAATGGATATTGCACAACTGGGATGATGAGAGCTGCCTGAAGCTATTGAAAAATTGCCACCAAGCATTACCAGAAGAAGGGAAAGTAATTGTTGTTGATATGGTGATCCCGGAAGGTGGTATCATCGACAAGAGCCTGTTTCAGTTCGATCTGTTCCGGATGAGCATGAACCCAGACGGGAAGGAAAGGACGCATCGAGAGCTCCAAACTTTGGGAGAAGCCACCGGCTTTTCAGGCGTTCGAGTGGCGGCTGCCGCCTTCAACTTCTCTGTGGTAGAGTTCTGTAAGTCCACCTCTTGA 1083 47.28 MEDGNSPNSDGNSDCLSTYAMQIATSSVLPMVFKSAIELGVLNVLKAEGDSALLSSSEIASKLPASNNPEASSVLERILRLLASHSILVSSVRSSSGDGFPLRVYGLAPVSHYFIPNQDGVSLASLLHTIQDSVTIDAWFHLRDAVLEGGLPFQRAHGMRAAEYVRKDSRFGGMFRNSMEDYNVLIMKKIMEVYKGFEGLTSLVDVGGGNGTVLRMITSKYPLLRGINFDLPHVIQQSYPGNENIGGDMFVSIPKGDAIFMKWILHNWDDESCLKLLKNCHQALPEEGKVIVVDMVIPEGGIIDKSLFQFDLFRMSMNPDGKERTHRELQTLGEATGFSGVRVAAAAFNFSVVEFCKSTS 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29819752 29821554 - Bma021513.1 Bma05g00546 82630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00546 360 Pfam Dimerisation domain 31 83 IPR012967 GO:0046983
Bma05g00546 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 354 IPR029063 -
Bma05g00546 360 Gene3D Vaccinia Virus protein VP39 116 357 IPR029063 -
Bma05g00546 360 Gene3D - 2 114 IPR036388 -
Bma05g00546 360 PANTHER CAFFEIC ACID 3-O-METHYLTRANSFERASE 1-LIKE 18 358 - -
Bma05g00546 360 PIRSF O-mtase 1 357 IPR016461 GO:0008168
Bma05g00546 360 Pfam O-methyltransferase domain 139 339 IPR001077 GO:0008171
Bma05g00546 360 PANTHER O-METHYLTRANSFERASE 18 358 IPR016461 GO:0008168
Bma05g00546 360 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 357 IPR016461 GO:0008168
Bma05g00546 360 SUPERFAMILY Winged helix DNA-binding domain 18 117 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00546 Bma-Chr5:29819752 Bma10g01323 Bma-Chr10:46866691 7.09E-125 dispersed
Bma05g00542 Bma-Chr5:29493359 Bma05g00546 Bma-Chr5:29819752 4.05E-148 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00546 K13066 - qsu:112039311 421.779