Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00547 ATGACCAACTGCTCTTCAAGTATTTGTTCCAGTCAGGTTACCGAAACCGCCGATCTCGAAAATCACGAGGGCGTACCGGAACCGCACCTGGAGCTTTCTGCGAATGATGCCGATAACGTTCAGACGAGAGTTGTGGTATCGGAGCAGTGCCTCGCTCTTGAGTCCGTTACGGTGGTACCTAAGGACGAGGAAACACGTGCTGAGCAGCTATCGAATGCCGGTTCTCCTAAAAAAGAGTACTTGTCACGGTCTTCAAGTTTTCATGAACACTGCAGAATTTGTCATCACGAAAAGGAAGAAGATCTTATAGATCTTGGATGCAAGTGTCGTGGTGATCTTGCAAGAGCGCACCTGACATGCATAGGGGTCTGGTTTCAAACCAGGGGATCAAATAGGTGTGAGATATGCCAAGATGTAGCCGAGAATGTGCCAGCTCCATCGCCCCAGCAAAGGAACAGTTACTGGGTTTGGAGGATTAACCCAACTTTCAGAACAGATCGTGAAAGGAGTTGTTTTAGTCCACTTTGGGTGGCTTTTGCAATCCTCGTTGGGGGTCTATTGCTGGATGTGCTCATTTCCATTACGCTTGGTGTGTCAGCATTACCTATTAACATTATAATTGGAGTTATTGTGGTGCTTGGTCTTGGGACTGCATTGCGACTTGCACTGGAATTCTGCCATCAGTGGAGTTTGAGGAGAGCTGTTCAAAGGGTGGAGCTAATATAA 726 47.38 MTNCSSSICSSQVTETADLENHEGVPEPHLELSANDADNVQTRVVVSEQCLALESVTVVPKDEETRAEQLSNAGSPKKEYLSRSSSFHEHCRICHHEKEEDLIDLGCKCRGDLARAHLTCIGVWFQTRGSNRCEICQDVAENVPAPSPQQRNSYWVWRINPTFRTDRERSCFSPLWVAFAILVGGLLLDVLISITLGVSALPINIIIGVIVVLGLGTALRLALEFCHQWSLRRAVQRVELI 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29860561 29862300 - Bma021515.1 Bma05g00547 82631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00547 241 ProSiteProfiles Zinc finger RING-CH-type profile. 83 143 IPR011016 GO:0008270
Bma05g00547 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH11 ISOFORM X1 44 239 - -
Bma05g00547 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 145 IPR013083 -
Bma05g00547 241 Pfam RING-variant domain 91 136 IPR011016 GO:0008270
Bma05g00547 241 SUPERFAMILY RING/U-box 87 138 - -
Bma05g00547 241 PANTHER ZINC FINGER, RING-CH-TYPE 44 239 - -
Bma05g00547 241 SMART ringv_2 90 137 IPR011016 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00547 - - - dzi:111308236 251.906
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00547 Bma-Chr5:29860561 Bma03g00273 Bma-Chr3:2052787 4.41E-10 dispersed
Bma05g00547 Bma-Chr5:29860561 Bma02g01386 Bma-Chr2:56162019 4.34E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g280 . . . . Bpe05g00394 . . . . . . Cma15g01336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00547 . . . Cmo15g01397 . . . . . . Bhi12g00063 . . Lac11g1863 Hepe06g1415 . Lcy12g1487 . . . . . . . . . . Cme09g01898
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004760 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 4 8 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00547 Bma_Chr05 FPKM 8.20698 8.70875 10.095433 9.372772 8.452577 8.988624 9.280075 11.378369 11.338984 11.973031