Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00548 ATGTTTAACTCGCCTAATCCTTTTGAACAACAATCTAGCAATCCTTTTGCATCCCAATCAGGATTTCCACAAACTAGCATTGCAACTGCCAATCCTTTTGCTCCTAAACCCTTCGGCCGTACAAGTCCATTTGGTTCACAAACAGGCACTTCAATATTTGGTGGCACTTCAACTGGTGTCTTTGGTGCACCTCAGGCTTCTTCACCATTCTCTTCTACCACAACCTTTGGAGCTTCATCATCTCCTGCTTTTGGTACTACAATGTCTGCTTTTGGAGCTTCTTCTACTCCTGCTTTGGGTAGTTCATCATCAGCATTTGGAGGGTCGTCTGTCTTTGGGCAAAAGCCTGCTTTTGGAGGCTTTGGATCCACTCCTACTCAAACAAGTCCTTTTATGAGTACAAGTCAACAATCTCAGCCGGCATTTGGCAGCAGCATATTTGGTTCATCCTCTCCATTTGGTGCAACTATACAGTCTGCATTTGGTGCAACAAGCACTCCTGCTTTTGGTTCAACAAGCACCCCAGCATTCGGCGCGTCAAGCACCCCGGCATTTGGTGCTACAAGCACCCCATCCTTTGGGGCTACAAGTTCTCCAGCCTTTGGTGCTCCTACCACTCCTTCTTTTGGTTCGACATCTAGTTTGCCATTCGGTAGCACAGGAAGTGCATTTGGTGTGTCAACTTCCCCTGCTTTTGGAGCTGGAGGAGCATTTGGAGCTTCAAACACTCCTGTTTTTGGTTCCCCAAGTACCTCTGCATTTGGCGCTTCAAGTGCACCAGTTTTTGGGACATCTAGTACTCCTGCTTTTGGAGCTTCTAGTTCTCCGACCTTTGGTTTTGGGTCTAGTCCGGCTTTTGGCCAGTCCACTTCTGCATTTGGCAGCAACACATTTGGTTCTAATTCAACACCGTTTGGAACCCAGAGCTCTGCTTTTGGGGCTCAATCTACTACAACTTTTGGCAGTCAACGTGGAGGCACAAGAATAGCTGCTTACACTCCTACTACGGAACCAGATAGTGGCAGTGGCTCACAAGGAGCTGGGAAGTTAGAATCAATATCAGCTATGCCTGTATACAAAGATAAATGCCACGAAGAGTTGAGATGGGAGGATTATCAATTGGGAGATAAAGGTGGACCATTTCCTGCTGGTCAGTCTGCAGTAGGGGTTGGGTTTAATTCATCTACCCCATCACAGCCAAATCTTTTAACTTCATCTGCTACATTTGGCCAAGCTCCTTCTACATTTGGTCAAGCACCTGCTAATCCCTTTTCAACCCCTACATCCTCCAATCCATTCGCTCCAAAAACTTCAGCTTTTGGAACAACATCAAATTTTTCTTTTGGTTCTTCAGCTTTTGCTCCTTCCACCTCTTCCAATCTTTTTGGATCAACAGTATCACCGTCAACGTCATCATTTATATCAACATCTACTGCCCCATTTGGGAGCTCTCCTTCCTTATTTAATTCATCTAGTACACCTGCTTTTGGGTCTCAGTCTACCTTTGGCTCTGCTACTACTGCAGGAAGTACTCCGCCGTTTGGTCCCAGCATCAATTTTGGTAACACTCAAACTTCCCCTTTGTTCCCAACTTCTACACCGTCAATTGGGCAGACTGGTTCTGCATTTGGGCAGAGTACTTCCACCTTCGGACAAAATACTACTTCATTTGGTCAAGCACCTGCTAATCCCTTTTCAACCCCTACATCCTCCAATCCATTCGCTCCAAAAACTTCAGCTTTTGGAACAACATCAAATTTTTCTTTTGGTTCTTCAGCTTTTGCTCCTTCCACCTCTTCCAATCTTTTTGGATCAACAGTATCACCGTCAACGTCATCATTTATATCAACATCTACTGCCCCATTTGGGAGCTCTCCTTCCTTATTTAATTCATCTAGTACACCTGCTTTTGGGTCTCAGTCTACCTTTGGCTCTGCTACTACTGCAGGAAGTACTCCGCCGTTTGGTCCCAGCATCAATTTTGGTAACACTCAAACTTCCCCTTTGTTCCCAACTTCTACACCGTCAATTGGGCAGACTGGTTCTGCATTTGGGCAGAGTACTTCCACCTTCGGACAAAATACTACTTCATTTGGTCAATCAAGCTTGGGTACCGCACCTACATCTGTTTTTGGTAACAACCTTTTCTCGAGTGCACCATCACTAATGCCTTCCAGCACTCCAGCTTTTGGTCAATCGGCTTCCACTTTTTCCACACCTTTTCAACCTGCTCAAACACAGCCAGCTGGTGCATTTGGTTTTGGCAACTTCGGTCAGGCACAACCGGCTGGTACAAGTGGCATTGGTGGTACATCGAGCATCTTTGGACAAAATGGGTTTGGGCAATTGTCTGCCAGTCATGCTTCTGTGGTTGCACAACCTGCACCAGTCACAAATCCATTTGGAACTCTCCCTGTGATGCCGCAAATGTCAATTGGTCGAACTGGAAATACTTCTTCAATTCAATATGGTATTTCGAGCATGCCGGTTGTCGACAAACCTCCTCCTATGAAAATATCATCCTTGTTGACTTCTCGACATTTGTCACAACGAAGAATTAGGTTGCCTGCAAAAAAATATCATCCCAAGAAAGATGGTTCACAGGTTCCATTTTTCAGTGAAGATGAAGAAACACCTGGCACCCCAAAAGCAGATGCTCTTTTTATTCCCAGAGAGAATCCTAGGTCGCTGGTCATTCGTCCTGCAGAACAGTGGTCTACAAGAACTAGTGCAGAGAAATCTGCATCAGTGAAAGAGACATCTGGATTGCATGTGAATGGAAAAAATCCTGAAGAAACTTCAATCTCAAGTGATTTCGGTATCAGAGATAAGAATGGAAATTCTGTGGAAAATGGTCTAGAAAAGGAGCCCAGTCAGCTTCATGGAGTAAACCAGAAAACGAATGGAAACCCGAAAACCAATGGATTCCATGAGGATAGCATTCAAAAAGGGGAGACATATATGACTGTCAATGGCAATCGGGCTGGTGAAGCTGCCATTGCCTATGAACATGGTGCAGACATCGAGGCATTGATGCCAAAACTCCGACTTGCTGATTATTATACAGAGCCTAAAATACAAGAATTAGCAGCCAAGGAGAGAGCTTATCCTGGATTTTGCAGCCATGTGAAGGACTTTGTGGTTGGACGTCATGGTTTCGGAAGCATAAAATTCTTTGGCGAGACGGATGTAAGACGAATTGATCTTGATTCTCTTGTCCAGTTCAACAACCGCGAGGTGATTGTGTACATGGATGACACCAAGAAGCCGCCGGTAGGACAAGGTCTTAACAAACCAGCCGAGGTAACATTACTGAATATCAAATGTTTTGACAAGAAAACAGGTTGGCAATACACGGAAGGGCCAAAAGTTGAGAAGTACAAAGAGATGTTAAAGAGGAAGGCGGAAGATCAAGGTGCCAAGTTTGTCTCGTACGACCCCGTAGAAGGAGAGTGGAAGTTCAAGGTTAATCACTTCAGCAAGTACAGTGTGGGAGATGAAGAAGAAGTTAGTGAATGGGAATGA 3525 44.99 MFNSPNPFEQQSSNPFASQSGFPQTSIATANPFAPKPFGRTSPFGSQTGTSIFGGTSTGVFGAPQASSPFSSTTTFGASSSPAFGTTMSAFGASSTPALGSSSSAFGGSSVFGQKPAFGGFGSTPTQTSPFMSTSQQSQPAFGSSIFGSSSPFGATIQSAFGATSTPAFGSTSTPAFGASSTPAFGATSTPSFGATSSPAFGAPTTPSFGSTSSLPFGSTGSAFGVSTSPAFGAGGAFGASNTPVFGSPSTSAFGASSAPVFGTSSTPAFGASSSPTFGFGSSPAFGQSTSAFGSNTFGSNSTPFGTQSSAFGAQSTTTFGSQRGGTRIAAYTPTTEPDSGSGSQGAGKLESISAMPVYKDKCHEELRWEDYQLGDKGGPFPAGQSAVGVGFNSSTPSQPNLLTSSATFGQAPSTFGQAPANPFSTPTSSNPFAPKTSAFGTTSNFSFGSSAFAPSTSSNLFGSTVSPSTSSFISTSTAPFGSSPSLFNSSSTPAFGSQSTFGSATTAGSTPPFGPSINFGNTQTSPLFPTSTPSIGQTGSAFGQSTSTFGQNTTSFGQAPANPFSTPTSSNPFAPKTSAFGTTSNFSFGSSAFAPSTSSNLFGSTVSPSTSSFISTSTAPFGSSPSLFNSSSTPAFGSQSTFGSATTAGSTPPFGPSINFGNTQTSPLFPTSTPSIGQTGSAFGQSTSTFGQNTTSFGQSSLGTAPTSVFGNNLFSSAPSLMPSSTPAFGQSASTFSTPFQPAQTQPAGAFGFGNFGQAQPAGTSGIGGTSSIFGQNGFGQLSASHASVVAQPAPVTNPFGTLPVMPQMSIGRTGNTSSIQYGISSMPVVDKPPPMKISSLLTSRHLSQRRIRLPAKKYHPKKDGSQVPFFSEDEETPGTPKADALFIPRENPRSLVIRPAEQWSTRTSAEKSASVKETSGLHVNGKNPEETSISSDFGIRDKNGNSVENGLEKEPSQLHGVNQKTNGNPKTNGFHEDSIQKGETYMTVNGNRAGEAAIAYEHGADIEALMPKLRLADYYTEPKIQELAAKERAYPGFCSHVKDFVVGRHGFGSIKFFGETDVRRIDLDSLVQFNNREVIVYMDDTKKPPVGQGLNKPAEVTLLNIKCFDKKTGWQYTEGPKVEKYKEMLKRKAEDQGAKFVSYDPVEGEWKFKVNHFSKYSVGDEEEVSEWE 1174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29945633 29954703 + Bma021518.1 Bma05g00548 82632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00548 1174 MobiDBLite consensus disorder prediction 1 57 - -
Bma05g00548 1174 PANTHER BNAC05G07920D PROTEIN 3 584 - -
Bma05g00548 1174 Gene3D - 325 377 - -
Bma05g00548 1174 PANTHER BNAC05G07920D PROTEIN 597 1169 - -
Bma05g00548 1174 Gene3D Peptidase S59, nucleoporin 1014 1166 IPR036903 -
Bma05g00548 1174 SUPERFAMILY C-terminal autoproteolytic domain of nucleoporin nup98 1011 1166 IPR036903 -
Bma05g00548 1174 MobiDBLite consensus disorder prediction 541 577 - -
Bma05g00548 1174 MobiDBLite consensus disorder prediction 860 887 - -
Bma05g00548 1174 MobiDBLite consensus disorder prediction 1 31 - -
Bma05g00548 1174 Pfam Nucleoporin autopeptidase 1019 1163 IPR007230 GO:0005643|GO:0006913|GO:0017056
Bma05g00548 1174 MobiDBLite consensus disorder prediction 640 699 - -
Bma05g00548 1174 MobiDBLite consensus disorder prediction 41 57 - -
Bma05g00548 1174 MobiDBLite consensus disorder prediction 905 943 - -
Bma05g00548 1174 ProSiteProfiles NUP C-terminal domain profile. 1017 1159 IPR007230 GO:0005643|GO:0006913|GO:0017056
Bma05g00548 1174 PANTHER NUCLEOPORIN 597 1169 IPR037665 GO:0005643
Bma05g00548 1174 PANTHER NUCLEOPORIN 3 584 IPR037665 GO:0005643
Bma05g00548 1174 MobiDBLite consensus disorder prediction 499 525 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00548 K14297 NUP98, ADAR2, NUP116; nuclear pore complex protein Nup98-Nup96 - vvi:100249633 1044.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00548 Bma12g00417 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00548 Bma-Chr5:29945633 Bma12g00746 Bma-Chr12:34300650 7.29E-36 dispersed
Bma12g00462 Bma-Chr12:11941429 Bma05g00548 Bma-Chr5:29945633 7.29E-37 transposed
Bma12g00417 Bma-Chr12:9384421 Bma05g00548 Bma-Chr5:29945633 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g291 . . . Bda08g00748 Bpe05g00397 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00548 Bma12g00417 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003607 3 2 2 2 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 1 1 2 3 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00548 Bma_Chr05 FPKM 2.726191 3.144432 2.246223 1.288886 4.452233 4.73355 4.842531 0.0 0.0 0.069004