Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00558 ATGTCATTCCGTAGCCTAGTCCGAGATGTAAGGGATAGTATTGGGAGCTTATCCAGACGTGGATTTGAGGTCCGCCTGACTGGCCATAACCGAGAAAAATCGTACGGTTCTTGCCATGATTTGCACGATCAGCCTCTTGTGGTTCAGAGCAGCTGCTGGGCCAATCTTCCACGGGAGCTGCTCTATGATGTGATCAGGAGGCTGGAGGAGAGCGAAAGCACTTGGCCTTCGCGTAAGCATGTCATTGCTTGTGCTGCAGTTTGCCGTTCTTGGAGAAACATGTGCAAAGAATTAGTTAAAAATCCTGAAATTTGTGGGAAGCTTACCTTTCCTGTGTCTCTAAAGCAGCCAGGGCCACGTGACGGAACCATCCAGTGCTTCATTAAAAGGGATAAGTCGAATTTAACGTACCACCTCTATCTATGTCTTAGCCCTGGCAAGTATTTTTCTTTGCTGGTTGAAAATGGGAAATTCCTTCTTTCTGCAAAACGAACACGAAGAACGACTAGCACTGAGTACGTTATCTCAATGGATGCTGAGAACATCTCGAGATCAAGCAGGACCTATATCGGAAAACTAAGGTCAAATTTTCTCGGTACAAAGTTCATCATATACGACACTCAACCTCCATACACGTCTGCTGCCATTCCTTCGCACGGTAAAACAAGTCAAAGATTCTACTCAAAAAAGGTCTCCCCGAAAGTCCCAAGCGGAAGCTACAACATTGCCCAAATAAGCTACGAACTAAACGTGTTGGGCACTCGAGGCCCGCGAAGAATGCACTGTGTGATGCATTCGATCCCATTTTCGTCCCTCGATGTAGGCGGATTCGTCCCTGGACGGCCGGAGCTCCTCCCCCGCACGCTTGAAGACTCATTCCGGAGCATCTCCTTCTCCAAGTCTCTCGATTATTCCATGGAGTTCAGCAGCTCTAGATTCTCCGAAATCGGCAGATGTGTCGACGGTGATGAGGAGGAAAAGACGGTTATACCCTTGGTGCTGAAAAACAAGCCGCCGAGATGGCACGAGCAGTTGCAGTGCTGGTGCTTGAATTTCCGAGGGCGTGTGACGGTTGCTTCTGTTAAGAACTTTCAGTTGATTGCAGGGGCACAGCCGGTGGCCGGGGCTCTAGCGTCATCTCAGCCGACTCCTCCGGAGTACGATAAGATAATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTTACGATGGATTACCGGTATCCGTTATCGGCTTTTGAGGCTTTCTCCATTTGCTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG 1293 48.72 MSFRSLVRDVRDSIGSLSRRGFEVRLTGHNREKSYGSCHDLHDQPLVVQSSCWANLPRELLYDVIRRLEESESTWPSRKHVIACAAVCRSWRNMCKELVKNPEICGKLTFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLYLCLSPGKYFSLLVENGKFLLSAKRTRRTTSTEYVISMDAENISRSSRTYIGKLRSNFLGTKFIIYDTQPPYTSAAIPSHGKTSQRFYSKKVSPKVPSGSYNIAQISYELNVLGTRGPRRMHCVMHSIPFSSLDVGGFVPGRPELLPRTLEDSFRSISFSKSLDYSMEFSSSRFSEIGRCVDGDEEEKTVIPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAGAQPVAGALASSQPTPPEYDKIILQFGKVGKDMFTMDYRYPLSAFEAFSICLSSFDTKLACE 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31534520 31537194 - Bma021547.1 Bma05g00558 82642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00558 430 PANTHER TUBBY-RELATED 1 430 - -
Bma05g00558 430 Gene3D Tubby Protein; Chain A 110 430 IPR025659 -
Bma05g00558 430 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Bma05g00558 430 PRINTS Tubby superfamily signature 334 351 IPR000007 -
Bma05g00558 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Bma05g00558 430 PRINTS Tubby superfamily signature 239 266 IPR000007 -
Bma05g00558 430 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Bma05g00558 430 PRINTS Tubby superfamily signature 352 368 IPR000007 -
Bma05g00558 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Bma05g00558 430 ProSitePatterns Tub family signature 1. 352 365 IPR018066 -
Bma05g00558 430 SUPERFAMILY Tubby C-terminal domain-like 102 430 IPR025659 -
Bma05g00558 430 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 430 - -
Bma05g00558 430 Pfam F-box domain 53 100 IPR001810 GO:0005515
Bma05g00558 430 Gene3D - 48 101 - -
Bma05g00558 430 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Bma05g00558 430 Pfam Tub family 114 425 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00369 Bma-Chr4:2965742 Bma05g00558 Bma-Chr5:31534520 0 dispersed
Bma04g01707 Bma-Chr4:53284650 Bma05g00558 Bma-Chr5:31534520 0 dispersed
Bma05g00558 Bma-Chr5:31534520 Bma12g01166 Bma-Chr12:44318478 0 dispersed
Bma12g00381 Bma-Chr12:7436285 Bma05g00558 Bma-Chr5:31534520 0 wgd
Bma12g00402 Bma-Chr12:8538269 Bma05g00558 Bma-Chr5:31534520 0 wgd
Bma05g00558 Bma-Chr5:31534520 Bma05g00585 Bma-Chr5:34169253 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57314 PF01167 Tub 1.30E-114 CL0395 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00558 K19600 - jre:109007061 726.087