Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma05g00569 | ATGGATAACTTATGTTGCTTCAGTTCTATCCATTCTCAGGTTGCAGGAGGAAAGTCATCATGCCGCTCCGGAAAGGGTCGAAGCAATCTGATCCCTGTCAAGTATGGCTTCAGCCTAGCTAAAGGGAAAGCAAGTCATCCAATGGAGGATTATCATGTTGCTAAGTTCGTACCATTATGCGGACACGAGCTCGGCCTTTTCGCTATATACGACGGACATCTTGGAGATACCGTTCCGGCCTATTTAGAAAAGCATCTGTTTCATAATATCTTGAAGCATGAGGCTTTTTGGACTGATCCTCGTAGGTCCATTTCGGAAGCCTATGAGAGGACAGACCAAGCAATTCTTTCTCACTCTCCCGACCTCGGAAGAGGTGGATCCACTGCAGTCACTGCTATTCTGATAAATGGCCGGAAATTATGGGTGGCAAATGTTGGAGATTCACGAGCAGTTCTTTCGAGGAGAGGGCAAGCGGAGCAGATGTCGACTGATCACGAGCCTAATACTGATCGATGTAGCATCGAGGATAGAGGTGGCTTCGTCTCAAATTTGCCAGGGGATGTTGCAAGAGTGAATGGACAGCTAGCAGTTTCTCGAGCCTTTGGTGACAAGAACCTCAAATCGCACTTACGATCCGATCCCGATGTAAAAGACACTGATATTAACGCAGAGACGGATATTCTCATTTTAGCTAGTGATGGTATATGGAAGGTGATGTCGAATCAAGAAGCAGTGGATATCGGGAGGAAGACGAAGGATCCGGAGAAGGCAGCCAAGCAACTGGTGTCGGAGGCGTTGAGCCGTGAAAGCAAAGACGACATCTCCGTCGTCGTAGTTCGTTTCGCAAACTAA | 852 | 47.54 | MDNLCCFSSIHSQVAGGKSSCRSGKGRSNLIPVKYGFSLAKGKASHPMEDYHVAKFVPLCGHELGLFAIYDGHLGDTVPAYLEKHLFHNILKHEAFWTDPRRSISEAYERTDQAILSHSPDLGRGGSTAVTAILINGRKLWVANVGDSRAVLSRRGQAEQMSTDHEPNTDRCSIEDRGGFVSNLPGDVARVNGQLAVSRAFGDKNLKSHLRSDPDVKDTDINAETDILILASDGIWKVMSNQEAVDIGRKTKDPEKAAKQLVSEALSRESKDDISVVVVRFAN | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 33234728 | 33239043 | - | Bma021574.1 | Bma05g00569 | 82653 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma05g00569 | 283 | CDD | PP2Cc | 33 | 281 | IPR001932 | - | |
| Bma05g00569 | 283 | Gene3D | - | 29 | 283 | IPR036457 | - | |
| Bma05g00569 | 283 | ProSiteProfiles | PPM-type phosphatase domain profile. | 34 | 281 | IPR001932 | - | |
| Bma05g00569 | 283 | Pfam | Protein phosphatase 2C | 41 | 274 | IPR001932 | - | |
| Bma05g00569 | 283 | SMART | PP2C_4 | 30 | 279 | IPR001932 | - | |
| Bma05g00569 | 283 | PANTHER | PHOSPHATASE 2C FAMILY PROTEIN | 1 | 282 | - | - | |
| Bma05g00569 | 283 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 282 | IPR015655 | GO:0004722|GO:0006470 | |
| Bma05g00569 | 283 | SMART | PP2C_SIG_2 | 45 | 281 | IPR001932 | - | |
| Bma05g00569 | 283 | SUPERFAMILY | PP2C-like | 27 | 282 | IPR036457 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma01g02612 | Bma-Chr1:83699069 | Bma05g00569 | Bma-Chr5:33234728 | 3.73E-155 | dispersed | |
| Bma05g00569 | Bma-Chr5:33234728 | Bma12g00365 | Bma-Chr12:6487620 | 0 | dispersed | |
| Bma14g01999 | Bma-Chr14:43298404 | Bma05g00569 | Bma-Chr5:33234728 | 6.12E-49 | dispersed | |
| Bma05g00569 | Bma-Chr5:33234728 | Bma07g00627 | Bma-Chr7:9974271 | 3.45E-115 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma05g00569 | K17506 | - | pvy:116142160 | 473.781 |