Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00585 ATGTCATTCCGTAGCCTAGTCCGAGATGTAAGGGATAGTATTGGGAGCTTATCCAGACGTGGATTTGAGGTCCGGTTGACTGGCCATAACCGAGAAAAATCGTACGGTTCTTGCCATGATTTGCACGGTCAGCCTCTTGTGGTTCAGAGCAGCTGCTGGGCCAACCTTCCACCGGAGCTGCTCTATGATGTGATCAGGAGGCTGGAGGAGAGCGAAAGCACTTGGCCTTCGCGTAAGCATGTCATTGCTTGTGCTGCAGTTTGCCGTTCTTGGAGAAACATGTGCAAAGAATTAGTTAAAAATCCTGAAATTTGTGGGAAGCTTACCTTTCCTGTGTCTCTAAAGCAGCCAGGGCCACGTGACGGAACCATCCAGTGCTTCATTAAAAGGGATAAGTCGAATTTAACGTACCACCTCTATCTATGTCTTAGCCCTGCTTTGCTGGTTGAAAATGGGAAATTCCTTCTTTCTGCAAAACGAACACGAAGAACGACTAGCACTGAGTACGTTATCTCAATGGATGCTGAGAACATCTCGAGATCAAGCAGGACCTATATCGGAAAACTAAGGTCAAATTTTCTCGGTACAAAGTTCATCATATACGACACTCAACCTCCATACACATCTGCTGCCATTCCTTCGCCCGGTAAAACAAGTCAAAGATTCTACTCAAAAAAGGTCTCCCCGAAAGTCCCAAGCGGAAGCTACAACATTGCCCAAATAAGCTACGAACTAAACGTGTTGGGCACTCGAGGCCCGCGAAGAATGCACTGTGTGATGCATTCGATCCCATTTTCGTCCCTCGATGTAGGCGGATTCGTCCCTGGACGGCCGGAGCTCCTCCCCCGCACGCTTGAAGACTCATTCCGGAGCATCTCCTTCTCCAAGTCTCTCGATTATTCCATGGAGTTCAGCAGCTCTAGATTCTCCGAAATCGGCAGACGTGTCGACGGTGATGAGGAGGAAAAGACGGTTATACCCTTGGTGCTGAAAAACAAGCCGCCGAGATGGCACGAGCAGTTGCAGTGCTGGTGCTTGAATTTCCGAGGGCGTGTGACGGTTGCTTCTGTTAAGAACTTTCAGTTGATTGCAGGGGCACAGCCGGTGGCCGGGGCTCTAGTGTCATCTCAGCCGACTCCTCCGGAGTACGATAAGATAATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTTACGATGGATTACCGGTATCCGTTATCGGCCTTTGAGGCTTTCTCCATTTGCTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG 1281 49.1 MSFRSLVRDVRDSIGSLSRRGFEVRLTGHNREKSYGSCHDLHGQPLVVQSSCWANLPPELLYDVIRRLEESESTWPSRKHVIACAAVCRSWRNMCKELVKNPEICGKLTFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISMDAENISRSSRTYIGKLRSNFLGTKFIIYDTQPPYTSAAIPSPGKTSQRFYSKKVSPKVPSGSYNIAQISYELNVLGTRGPRRMHCVMHSIPFSSLDVGGFVPGRPELLPRTLEDSFRSISFSKSLDYSMEFSSSRFSEIGRRVDGDEEEKTVIPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAGAQPVAGALVSSQPTPPEYDKIILQFGKVGKDMFTMDYRYPLSAFEAFSICLSSFDTKLACE 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34169253 34171866 + Bma021592.2 Bma05g00585 82669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00585 426 Pfam F-box domain 53 100 IPR001810 GO:0005515
Bma05g00585 426 Pfam Tub family 114 421 IPR000007 -
Bma05g00585 426 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bma05g00585 426 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Bma05g00585 426 PRINTS Tubby superfamily signature 404 426 IPR000007 -
Bma05g00585 426 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bma05g00585 426 PRINTS Tubby superfamily signature 383 402 IPR000007 -
Bma05g00585 426 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Bma05g00585 426 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Bma05g00585 426 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 426 - -
Bma05g00585 426 PANTHER TUBBY-RELATED 1 426 - -
Bma05g00585 426 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
Bma05g00585 426 Gene3D Tubby Protein; Chain A 110 426 IPR025659 -
Bma05g00585 426 SUPERFAMILY Tubby C-terminal domain-like 102 426 IPR025659 -
Bma05g00585 426 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Bma05g00585 426 Gene3D - 48 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00212 Bma-Chr4:1832725 Bma05g00585 Bma-Chr5:34169253 8.90E-152 dispersed
Bma05g00585 Bma-Chr5:34169253 Bma12g01166 Bma-Chr12:44318478 0 dispersed
Bma04g01707 Bma-Chr4:53284650 Bma05g00585 Bma-Chr5:34169253 0 transposed
Bma12g00402 Bma-Chr12:8538269 Bma05g00585 Bma-Chr5:34169253 0 wgd
Bma12g00381 Bma-Chr12:7436285 Bma05g00585 Bma-Chr5:34169253 0 wgd
Bma05g00558 Bma-Chr5:31534520 Bma05g00585 Bma-Chr5:34169253 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57315 PF01167 Tub 3.10E-115 CL0395 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00585 K19600 - jre:109007061 737.643