Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00591 ATGGACGCAGGAAGTGTCAGAACTTATCTTATTGGTACGGGCATTTGGCGCACCAAAGGCCTCATTGGCGGCAAATGGACTGATGCATATGATGGGAAGACCATTAAGGTTTACAACCCGGCAACTGGTGAGGAGGTGGCAGATGTTGCATGTATGGGTAAAAGGGAGACAAATGATGCTATCTCTTGTGCCTATGAAGCATTTAAATCTTGGGGCAAGCTTACTGCCATTGAAAGGACCAAACGCCTTAAAAAATGGTATGATTTATTGATCGCATACAAGGAAGAGCTAGGACAAATTATAACCTTAGAGCAAGGAAAACCTTTTAAGGACGCAGTTGGTGAGGTTATTTTCGGGGCCAGCTACATTGATTTTTTTGCAGAAGAAGCGAAACGAGTCTATGGTGATATAATTCCATCAACTGTAGCTGATCGTCGGCTTTTGATCTTAAAGCAGCCCGTTGGAGTTGTTGGTGCAATTACACCTTGGAACTTTCCTTTGGCTATGATTGCTCGGAAGGTTGGTCCTGCTCTTGCATGTGGCTGTACTGTTGTTATAAAACCATCTGAACTCACACCTCTCACAGCTTTAGCAGCAGCTGAGCTCTCCCTTCAGGCTGGAATTCCCCCTGGCGTTGTGAATGTGGTCATGGGAAATGCTCCAGAAATTGGGGATGCTTTACTTGTCAGCAAACAGGTAAGAAAGATAACATTCACTGGCTCAACAGCAGTGGGGAAGATGTTGATGGCTCGAGCTGCGGAGACTGTTAAAAAGGTGTCTCTTGAACTTGGTGGCAATGCACCTTGCATTGTGTTTGCTGATGCAGATATTGATGTTGCAGTAAAAGGAACTCTTGCTGCAAAGTTCCGAAACACTGGGCAAACTTGTGTATGTGCCAACAGAATTTTTGTCCAAGAAGGTATATACGAAAAATTCACGGCTGCTTTTTCCAGAGAAGTCCGAAATATGAAAGTTGGACATGGCTTTAGTGAAGGTGTTGTTCAGGGTCCTCTCATCAATGAAGCTGCAATTTACAAGGTTGAAACATTTATTCAAGATGCTGTCACTAAGGGAGCAAAAGTTGTTCTGGGAGGTCAAAGGCATAGGCTGGGAATGACCTTTTATGAGCCTACCGTTCTTAAGGATGTCAACAATGACATGCGGATAGCCAGAGAGGAAGTATTTGGTCCTGTGGCACCCTTATTGCCGTTCAGAACTGAGGAGGAAGTAATTTCCCTTGCCAATGATACCAATGCAGGGTTAGCTGCTTATGTATTCACTCAGAATCTTCAACGATCTTGGCGCATGACTGAATCTCTTGAATACGGCATTGTTGGTGTCAATGAAGGACTCATTTCTACCGAGGTAGCTCCATTTGGAGGCTTTAAACAATCAGGGCTTGGTCGGGAAGGTTCGAAATATGGGATGGAGGACTATCTGGAGATGAAGTACATGTGCTTGGGGAATCTGTAA 1473 44.47 MDAGSVRTYLIGTGIWRTKGLIGGKWTDAYDGKTIKVYNPATGEEVADVACMGKRETNDAISCAYEAFKSWGKLTAIERTKRLKKWYDLLIAYKEELGQIITLEQGKPFKDAVGEVIFGASYIDFFAEEAKRVYGDIIPSTVADRRLLILKQPVGVVGAITPWNFPLAMIARKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGNAPEIGDALLVSKQVRKITFTGSTAVGKMLMARAAETVKKVSLELGGNAPCIVFADADIDVAVKGTLAAKFRNTGQTCVCANRIFVQEGIYEKFTAAFSREVRNMKVGHGFSEGVVQGPLINEAAIYKVETFIQDAVTKGAKVVLGGQRHRLGMTFYEPTVLKDVNNDMRIAREEVFGPVAPLLPFRTEEEVISLANDTNAGLAAYVFTQNLQRSWRMTESLEYGIVGVNEGLISTEVAPFGGFKQSGLGREGSKYGMEDYLEMKYMCLGNL 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35840271 35850163 + Bma021609.1 Bma05g00591 82675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00591 490 CDD ALDH_F5_SSADH_GabD 37 487 - -
Bma05g00591 490 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 37 483 IPR010102 GO:0009013|GO:0009450
Bma05g00591 490 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 32 479 IPR016162 GO:0016491
Bma05g00591 490 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 261 268 IPR029510 GO:0016491
Bma05g00591 490 SUPERFAMILY ALDH-like 12 488 IPR016161 GO:0016491
Bma05g00591 490 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 289 300 IPR016160 GO:0016491
Bma05g00591 490 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 265 454 IPR016163 GO:0016620
Bma05g00591 490 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 15 489 - -
Bma05g00591 490 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 15 489 - -
Bma05g00591 490 Pfam Aldehyde dehydrogenase family 26 484 IPR015590 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01129 Bma-Chr4:28035143 Bma05g00591 Bma-Chr5:35840271 1.43E-62 dispersed
Bma05g00591 Bma-Chr5:35840271 Bma12g00367 Bma-Chr12:6536750 0 dispersed
Bma06g00962 Bma-Chr6:46029103 Bma05g00591 Bma-Chr5:35840271 2.63E-67 dispersed
Bma09g00142 Bma-Chr9:4826596 Bma05g00591 Bma-Chr5:35840271 2.25E-38 dispersed
Bma05g00591 Bma-Chr5:35840271 Bma07g00481 Bma-Chr7:5816668 6.06E-101 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00591 K17761 - twl:119988855 785.793