Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00620 ATGGCGTCCGCCGTCTTAGCTGACAGGAACGGTTCTAATTGGATCCAGCACAGAGGCGGAGGTGGTAGTGGAGGTGGTGTACTGGGCGGAGATGGTAGAGGAGGTGTTGTACTAATGGGAAAAGTTCCCTTCTCTAAACCTAACCCTAGTTATAACAAGAGGAAATTTCACGGCGAGACGAACGGATTTCCGATGGATGAGTCTCCAGCTGTGACTCAATCGGCTTCGGATGATGCATCTTCGATTAATCATCGTCTTAAATTTTCAAACCCAATTGAGTACAACGTGTATGAAACCTTTAATATTACGTCCTACACCGGGAAGGAACTCATAGACCTTCAGCATCGATTAACCAGGGAGCTTGAACAGGTTCGACAAATGAAAAATCGTCTTAACTCCAGCGACTTCAATCAGAGGCCAAATCATCCGAAAAAATCATCGAAGATGTCTGGTAAAAAGCGACCATTATCTTCGTCAAGCTTTGGGCAAGATTCGAAGCGCTCGAATTCTGAACTTGGGAATATAATGAAGTCGTGCTCGCAGATATTGACGAAATTAATGAAACACAAACACGGTTGGATCTTTAACAAGCCCGTTGATGTAATCGGAATGGGCCTCCACGATTACTACGATATTATTAAACGGCCTATGGATTTAGGTTCCGTTAAATCCAAGTTGAGCAAGAATCTGTACGCTTCACTGATGGATTTCGCTGCTGATGTTAAATTAATTTTCAACAATGCAATGGCTTACAATCCAAGGGGTCATGATGTTTACATAATGGCGGAGATCCTGCTGGCAAGGTTTGAGGAATTATTTCGTCCTTTTAGCATCACATTGGAGGATGAAAGGAACTTGGAGGATGAGGGGAACGAGGATCGGGTCTACGAAGAGGAATTGCAAGCTAGTTCTTGGAATCATTTGGGAACGGATAGCACGGAGAGGGAGCCTAATCAAAGATTGAGAAAATCTGACCAATCTAAGGGGCCAGCTAGCACTTCGAATCTGCCTCAACCTCCATTGGTGCAGTCGCCTGTCAGAACCCCTTCGCCCGTGAGGGTACCTCCTGTGAAGTCCTTGAAGCAGCCAAAGCCTAAGGCCAAGGACCCAAATAAGAGAGAGATGAGCTTGGAGGAGAAGCACAAATTGGGAATTGGATTGCAGAGTTTGCCACCAGAGAAAATGGAGCAAGTGGTGCACATTATAAATAAGAGGAACGGGCATTTGAAGCAAGAAGGGGATGAGATTGAGCTCGATATTGAGGCTGTCGATACAGAGACACTTTGGGAACTCGATCGACTGGTGACAAATTGGAAGAAGATGGTGAGCAAGATCAAACGGCAAGCTCTCCTGAGTAGCAATACAAATGCATCTTCCGCTCTCCTGAGTAACAACACGAATGCATCTTCCAACAAAACTAATGGGGCTTTGCCCGTGATTGAGAGAATGGAGGTTGCTTCCGATGCCAAAAAGCCAAGGAAAGGAGAAACTGGTGAGGAAGATGTGGACATTGGCGATGAGATGCCTATGAGCACCTTCCCACCCGTTGAGATTGAGAAAGATGCAGGAGTTCATGCCAGCAGCAGTTCTAGCAGCTCCAGTAGTTCGAGTAGCGATGATTCTTCTTCATCCAGTGATTCGGACTCTGAAGGAAGTTCTTCAGGGAGTGACTCTGATGATAATAAAGCACAGTCTTAG 1698 45.7 MASAVLADRNGSNWIQHRGGGGSGGGVLGGDGRGGVVLMGKVPFSKPNPSYNKRKFHGETNGFPMDESPAVTQSASDDASSINHRLKFSNPIEYNVYETFNITSYTGKELIDLQHRLTRELEQVRQMKNRLNSSDFNQRPNHPKKSSKMSGKKRPLSSSSFGQDSKRSNSELGNIMKSCSQILTKLMKHKHGWIFNKPVDVIGMGLHDYYDIIKRPMDLGSVKSKLSKNLYASLMDFAADVKLIFNNAMAYNPRGHDVYIMAEILLARFEELFRPFSITLEDERNLEDEGNEDRVYEEELQASSWNHLGTDSTEREPNQRLRKSDQSKGPASTSNLPQPPLVQSPVRTPSPVRVPPVKSLKQPKPKAKDPNKREMSLEEKHKLGIGLQSLPPEKMEQVVHIINKRNGHLKQEGDEIELDIEAVDTETLWELDRLVTNWKKMVSKIKRQALLSSNTNASSALLSNNTNASSNKTNGALPVIERMEVASDAKKPRKGETGEEDVDIGDEMPMSTFPPVEIEKDAGVHASSSSSSSSSSSSDDSSSSSDSDSEGSSSGSDSDDNKAQS 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37067915 37069799 - Bma021648.2 Bma05g00620 82704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00620 565 ProSiteProfiles NET domain profile. 365 446 IPR027353 -
Bma05g00620 565 MobiDBLite consensus disorder prediction 362 376 - -
Bma05g00620 565 MobiDBLite consensus disorder prediction 152 171 - -
Bma05g00620 565 MobiDBLite consensus disorder prediction 342 358 - -
Bma05g00620 565 Gene3D - 368 444 IPR038336 -
Bma05g00620 565 ProSitePatterns Bromodomain signature. 192 251 IPR018359 -
Bma05g00620 565 ProSiteProfiles Bromodomain profile. 187 259 IPR001487 GO:0005515
Bma05g00620 565 SMART bromo_6 168 278 IPR001487 GO:0005515
Bma05g00620 565 MobiDBLite consensus disorder prediction 484 500 - -
Bma05g00620 565 MobiDBLite consensus disorder prediction 1 26 - -
Bma05g00620 565 Pfam Bromodomain 179 263 IPR001487 GO:0005515
Bma05g00620 565 MobiDBLite consensus disorder prediction 460 476 - -
Bma05g00620 565 MobiDBLite consensus disorder prediction 130 144 - -
Bma05g00620 565 MobiDBLite consensus disorder prediction 524 565 - -
Bma05g00620 565 MobiDBLite consensus disorder prediction 460 565 - -
Bma05g00620 565 PANTHER TRANSCRIPTION FACTOR GTE2 87 565 - -
Bma05g00620 565 MobiDBLite consensus disorder prediction 324 341 - -
Bma05g00620 565 MobiDBLite consensus disorder prediction 300 376 - -
Bma05g00620 565 Coils Coil 110 134 - -
Bma05g00620 565 PRINTS Bromodomain signature 190 203 IPR001487 GO:0005515
Bma05g00620 565 PRINTS Bromodomain signature 206 222 IPR001487 GO:0005515
Bma05g00620 565 PRINTS Bromodomain signature 222 240 IPR001487 GO:0005515
Bma05g00620 565 PRINTS Bromodomain signature 240 259 IPR001487 GO:0005515
Bma05g00620 565 Gene3D - 137 289 IPR036427 GO:0005515
Bma05g00620 565 PANTHER OSJNBA0053K19.4 PROTEIN 87 565 - -
Bma05g00620 565 Pfam Bromodomain extra-terminal - transcription regulation 374 436 IPR027353 -
Bma05g00620 565 SUPERFAMILY Bromodomain 162 275 IPR036427 GO:0005515
Bma05g00620 565 MobiDBLite consensus disorder prediction 130 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00620 - - - csv:101216341 652.129
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00620 Bma08g00032 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01481 Bma-Chr1:28475680 Bma05g00620 Bma-Chr5:37067915 0 dispersed
Bma02g01398 Bma-Chr2:56232808 Bma05g00620 Bma-Chr5:37067915 1.32E-68 dispersed
Bma03g00085 Bma-Chr3:671928 Bma05g00620 Bma-Chr5:37067915 1.33E-32 dispersed
Bma05g00620 Bma-Chr5:37067915 Bma08g00032 Bma-Chr8:493690 0 dispersed
Bma05g00620 Bma-Chr5:37067915 Bma12g00714 Bma-Chr12:32073745 1.55E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00620 Bma_Chr05 FPKM 5.800776 6.004096 5.517485 6.645137 7.940377 7.487563 7.676853 9.458365 8.570086 8.036926