Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00631 ATGTTTTCGATGCATAATTTGTCTTCCACCTCGATTGCTTCGTCTTCCTCTGCGTTCTTTGCTTCCACCAATTTTAATTCAAGAACTTCGAATGTATCTCTTCCAGCGAAAAGCGTTGGAGTCTGTAAGTGCGTTGCTACGGATCAGGAAGTGAAGAATGCCCACAAAACAAAGGTTTCTCGCAATGAAAATATGGCGAAACTTCAGGCAGGATACCTCTTTCCTGAGATTGCGAGGAGAAGGGCTGCACATTTGTTGAAGTATCCTGACTCCCAAGTGATAAGCCTTGGTATTGGTGATACGACTGAGCCTATTCCTGATGTCATAACTTCTGCTATGGCAAAGAGATCAAATGCCTTGTCAACTCTAGAGGGTTATAGTGGTTATGGTGCGGAACAAGGTGAAAAGCCTTTGAGAGCTGCAATTGCTTCAACATATTATGGCGACCTAGGAATTCAGGAAGATGATATTTTTGTTTCAGATGGTGCAAAATGTGACATCTCCCGCCTTCAGGTTGTTATCTTTTATTTTGAGACCAATATGATTATTTTTTATTTCATGCAGGTTGTTTTTGGGTCTGATGTAGTAATGGCAGTTCAAGATCCGTCATATCCAGTGAGTCTAGGACTTGCTTTAAAATGGATGGAAATGCAGGCTTACGTTGATTCCAGTGTAATTATGGGGCAAACTGGACAGTTCCAGAAGGATGTTGAGAAGTATAGTAACATCGAATATATGAGATGTGGTCCAGAAAATGGTTTCTTTCCCGATTTATCTGCCATATCCCAGCCAGATATTATCTTTTTCTGTTCTCCAAACAACCCCACTGGTTCTGCTGCCACAAAAGAACAACTGACTCAGTTGGTGCAATTTGCAAAGGACAATGGATCAATCATAGTCTATGATTCTGCTTATGCTATGTATATTTCTGGAGATAATCCAAGATCCATCTATGAAATTCCTGGGGCCAAGGAGGTTGCAATTGAGACATCATCGTTTAGTAAGTATGCTGGTTTTACCGGAGTTCGTCTCGGTTGGACAGTAGTGCCAAAGGAGCTGCTATTTGCAGATGGTTTTCCTGTTGCCAAGGATTTCAACCGCATTGTTTGTACTTGTTTCAATGGTGCATCTAACATTGCTCAGGCCGGCGGTCTAGCCTGTCTTTCACAAGAAGGCCTTAAGGCAATGCGGAAGGTAATTGGATTTTACAAAGAAAATACAAGCATCATAATCGACACGTTTAGTTCTCTTGGTTTTAACGTGTATGGAGGGAAGGATGCGCCATACGTGTGGATTCATTTTCCAGGCAGAAATTCGTGGGATGTGTTTGGAGAGATATTGGAGAAAACTCACGTCGTCACAACGCCGGGAAGTGGTTTTGGACCAGGTGGTGAAGGTTTTATAAGGGTTAGTGCTTTTGGGCACAGAGAGAATATATTGGAAGCTTGTAGAAGATTCAAGCAGCTGTACAAGTGA 1476 42.14 MFSMHNLSSTSIASSSSAFFASTNFNSRTSNVSLPAKSVGVCKCVATDQEVKNAHKTKVSRNENMAKLQAGYLFPEIARRRAAHLLKYPDSQVISLGIGDTTEPIPDVITSAMAKRSNALSTLEGYSGYGAEQGEKPLRAAIASTYYGDLGIQEDDIFVSDGAKCDISRLQVVIFYFETNMIIFYFMQVVFGSDVVMAVQDPSYPVSLGLALKWMEMQAYVDSSVIMGQTGQFQKDVEKYSNIEYMRCGPENGFFPDLSAISQPDIIFFCSPNNPTGSAATKEQLTQLVQFAKDNGSIIVYDSAYAMYISGDNPRSIYEIPGAKEVAIETSSFSKYAGFTGVRLGWTVVPKELLFADGFPVAKDFNRIVCTCFNGASNIAQAGGLACLSQEGLKAMRKVIGFYKENTSIIIDTFSSLGFNVYGGKDAPYVWIHFPGRNSWDVFGEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRENILEACRRFKQLYK 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37263759 37274898 - Bma021661.2 Bma05g00631 82715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00631 491 CDD AAT_like 94 488 - -
Bma05g00631 491 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC 187 491 - -
Bma05g00631 491 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC 10 173 - -
Bma05g00631 491 Gene3D - 103 390 IPR015421 GO:0003824
Bma05g00631 491 PANTHER AMINOTRANSFERASE 187 491 IPR019942 GO:0008483
Bma05g00631 491 PANTHER AMINOTRANSFERASE 10 173 IPR019942 GO:0008483
Bma05g00631 491 Pfam Aminotransferase class I and II 93 486 IPR004839 GO:0009058|GO:0030170
Bma05g00631 491 Gene3D Aspartate Aminotransferase, domain 1 73 487 IPR015422 GO:0003824
Bma05g00631 491 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 60 488 IPR019942 GO:0008483
Bma05g00631 491 SUPERFAMILY PLP-dependent transferases 72 486 IPR015424 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00631 K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] - tcc:18607295 754.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00631 Bma-Chr5:37263759 Bma08g00487 Bma-Chr8:23815212 0 dispersed
Bma05g00631 Bma-Chr5:37263759 Bma15g00390 Bma-Chr15:4351313 2.42E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g813 . . . . . . Bma05g00631 . . . . . . . . . . . . . . . . . Cla10g00945 Cam10g0968 Cec10g1002 Cco10g0963 Clacu10g0990 Cmu10g1773 Cre10g1147 Cone12ag1018 Cone8ag1048 . . . . . . . Blo13g00238 . . . Bpe05g00455 . . . Cmo04g00449 . . . . . Cpe14g00243 Cpe01g00377 Bhi11g01087 . . . Hepe07g0382 Mch10g0394 . . . . . . . . Lsi03g00994 . . Cme07g02224
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006830 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00631 Bma_Chr05 FPKM 8.662482 7.531322 8.091295 7.389218 10.803815 11.58843 12.076804 7.672429 7.45832 9.241698