Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00634 ATGTGGGTGCCAAAGCTTCTCGTTATCACAGCCTTTGTGTGTCTAACCACGACACAAGCAGCCCGACCAAAGAACTACCACCAATACTGCCAAGACTTTGTCGATGCACACAACGTGGCTCGAGCCGAGGTGGGTGTTGGTCCAATCTCCTGGAACGAGACGGTAGCTGCCTATGCCCGACGATATGCTGAATCGAGAATCGCTGACTGCAACTTGGAGCATTCCAACGGGCCCTATGGCGAGAACATTGCCGAGGGATATGGCGAGATGTTGGGCGGAGACGCAGTGAGGTTTTGGGTAACGGAAAAGCCGTACTACGACTACGAGTCGAACAGATGTGTGGGTGACGAGTGCCTCCACTACACGCAAGTGGTGTGGCGAAATTCAGTTCATCTCGGATGTGCTAGTGTAAAGTGTCACAATGGTTGGGTTTTCGTTACTTGTAACTACGACCCACCCGGTAACTATATCGGCGAACGTCCTTATTGA 489 51.94 MWVPKLLVITAFVCLTTTQAARPKNYHQYCQDFVDAHNVARAEVGVGPISWNETVAAYARRYAESRIADCNLEHSNGPYGENIAEGYGEMLGGDAVRFWVTEKPYYDYESNRCVGDECLHYTQVVWRNSVHLGCASVKCHNGWVFVTCNYDPPGNYIGERPY 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37289685 37290173 + Bma021664.1 Bma05g00634 82718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00634 162 SUPERFAMILY PR-1-like 28 162 IPR035940 -
Bma05g00634 162 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 8 162 IPR001283 -
Bma05g00634 162 Gene3D CAP 28 162 IPR035940 -
Bma05g00634 162 CDD CAP_PR-1 31 162 - -
Bma05g00634 162 PANTHER - 8 162 - -
Bma05g00634 162 ProSitePatterns CRISP family signature 2. 145 156 IPR018244 GO:0005576
Bma05g00634 162 SMART SCP_3 28 158 IPR014044 -
Bma05g00634 162 Pfam Cysteine-rich secretory protein family 34 150 IPR014044 -
Bma05g00634 162 PRINTS Allergen V5/Tpx-1 family signature 145 158 IPR001283 -
Bma05g00634 162 PRINTS Allergen V5/Tpx-1 family signature 49 67 IPR001283 -
Bma05g00634 162 PRINTS Allergen V5/Tpx-1 family signature 95 108 IPR001283 -
Bma05g00634 162 PRINTS Allergen V5/Tpx-1 family signature 118 134 IPR001283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00634 K13449 PR1; pathogenesis-related protein 1 - mnt:112092684 247.284
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00634 Bma12g00314 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00634 Bma-Chr5:37289685 Bma05g00637 Bma-Chr5:37349998 1.65E-96 dispersed
Bma05g00634 Bma-Chr5:37289685 Bma05g00636 Bma-Chr5:37346105 1.21E-110 proximal
Bma12g00310 Bma-Chr12:4402042 Bma05g00634 Bma-Chr5:37289685 4.31E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g805 Blo02g00912 Blo03g00050 . . . . Bma05g00634 Bma12g00314 Cmo19g00538 Cmo11g01434 . . . . Sed06g0830 . Cpe15g00418 Bhi05g00999 Tan02g1068 Cmetu01g1966 Lac12g0134 . . . Cla02g00718 Cam02g0764 Cec02g0762 Cco02g0790 Clacu02g0757 Cmu02g0752 Cre02g1067 . . . . Lsi03g00628 Csa07g00656 . Cme01g00146 . . . . . Bpe05g00457 . . . Cmo04g00453 . . Cma19g00527 . . . . . . . . . . . . . . . . . . . . Chy01g00155 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002412 6 2 3 5 3 2 0 2 2 2 2 2 2 2 2 2 2 1 1 2 2 4 0 2 1 0 2 2 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00634 Bma_Chr05 FPKM 11.663217 11.225207 10.126319 8.445386 5.885978 4.231255 5.498483 8.975525 9.178535 10.524489