Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00637 ATGTGGGCGGCAAAGCTTCTCATGGTCATGGCCGTTGTGTGTCTAGCCACGACACAGGTAGTTCGAACGGAGGACTACCGCCAAGATTTTGTCGATGCACACAATGTGGCTCGAGCCGAGGTTGGCGTCGGTCCAATCTCTTGGAGCGAGACGGTAGCCGACTACGCCCGGCAATATGCTCAATCGAGAATCAATGATTGCAACCTGCAGCATTCCGACGGGCCCTACGGCGAAAATATTGCCGAAGGATATGGGGAGATGTTGGCTGGAGAAGCGGTGAGGCTTTGGGTATCAGAGAAGCCAAACTATGACTATGATTCAAACTCGTGTGTGGGTGGCGAGTGCCTCCACTACACGCAGGTGGTGTGGCATAATTCGGTCCATCTCGGATGCGCTAGTGTCAAGTGTCACAATGGGTGGGTTTTTGTCACATGTAACTATGATCCGCCCGGTAATTACATCGGTCAACGTCCTTATTAA 480 52.29 MWAAKLLMVMAVVCLATTQVVRTEDYRQDFVDAHNVARAEVGVGPISWSETVADYARQYAQSRINDCNLQHSDGPYGENIAEGYGEMLAGEAVRLWVSEKPNYDYDSNSCVGGECLHYTQVVWHNSVHLGCASVKCHNGWVFVTCNYDPPGNYIGQRPY 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37349998 37350477 + Bma021669.1 Bma05g00637 82721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00637 159 Gene3D CAP 19 159 IPR035940 -
Bma05g00637 159 PANTHER PATHOGENESIS-RELATED PROTEIN 1 11 159 - -
Bma05g00637 159 Pfam Cysteine-rich secretory protein family 31 147 IPR014044 -
Bma05g00637 159 PRINTS Allergen V5/Tpx-1 family signature 142 155 IPR001283 -
Bma05g00637 159 PRINTS Allergen V5/Tpx-1 family signature 115 131 IPR001283 -
Bma05g00637 159 PRINTS Allergen V5/Tpx-1 family signature 46 64 IPR001283 -
Bma05g00637 159 PRINTS Allergen V5/Tpx-1 family signature 92 105 IPR001283 -
Bma05g00637 159 SMART SCP_3 25 155 IPR014044 -
Bma05g00637 159 CDD CAP_PR-1 28 159 - -
Bma05g00637 159 SUPERFAMILY PR-1-like 23 159 IPR035940 -
Bma05g00637 159 ProSitePatterns CRISP family signature 2. 142 153 IPR018244 GO:0005576
Bma05g00637 159 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 11 159 IPR001283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00637 K13449 PR1; pathogenesis-related protein 1 - zju:107427106 231.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00634 Bma-Chr5:37289685 Bma05g00637 Bma-Chr5:37349998 1.65E-96 dispersed
Bma05g00637 Bma-Chr5:37349998 Bma12g00314 Bma-Chr12:4541972 9.34E-92 dispersed
Bma05g00636 Bma-Chr5:37346105 Bma05g00637 Bma-Chr5:37349998 9.75E-95 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g790 . Blo03g00054 Bda06g01150 . . . Bma05g00637 . Cmo19g00544 Cmo11g01430 . . . . Sed10g1935 . . Bhi05g01000 Tan02g1067 Cmetu01g2331 Lac12g0135 . . . Cla02g00703 Cam02g0736 Cec02g0750 Cco02g0776 Clacu02g0746 Cmu02g0741 Cre02g1054 . . . . Lsi03g00608 Csa07g00665 . Cme01g00137 . . . . . . . . . . . . Cma19g00535 . . . . . . . . . . . . . . . . . . . . Chy01g00149 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002412 6 2 3 5 3 2 0 2 2 2 2 2 2 2 2 2 2 1 1 2 2 4 0 2 1 0 2 2 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00637 Bma_Chr05 FPKM 21.560886 24.50967 34.11277 36.010082 56.405415 58.810818 58.048321 57.138931 55.86898 48.125622