Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00652 ATGGCTTCGTCCCTTCTCTCTGCCCCTCCCTCGTCTCCCGCAGCTGAGTCTCGAACTATTTGTCATCTGGTTCCCTCGATTTCGCTTCCAAAGTCCTCTTTTCTCTGCGGCTGTAATAATCTCCTTTCTTCTTCTACTCGATCTTTATCTTGCTCGAGAAGAAGCGGTCAGCGGAGAAGTTTCAAATCTCCTGTTGCTGAAAAATCTTTCGACCACATCCCCAAGCAGTTCAGAGAAGAAAATCTCAAAGATGGGGTGATGGACAATTACAATAATACTCCACAATATCTTTATGGTCTTTCTCCGTCTCAAATGGACATGTTCATGACTGAAGATAATCCTGTGCGCGGGCAGTCAGCATTAGTCACAGAGGAAAATATTTCATCAGCTCACAATTATTTAAATCATGGGGGAATGTGGAGTATGTCAGGAATGAATGGAAAAGGTCCTTCAAAATATAGCATGAGTGTAAGCATGTATCGTGGAGGTGGAAGAGGATATGGTAGGCCACGAACGGCTCCTCCGGATTTACCTTCTCTGCTCTTGGATGCTCGAATATGCTATTTAGGCATGCCCATTGTACCTGCAGTAACCGAGCTTATTGTTGCTCAATTTATGTGGTTAGACTATGACAACCCTTCAAAGCCTATATATTTATATATTAATTCATCTGGGACTCAGAATGAGAAGATGGAGACAGTTGGATCTGAAACTGAGGCATATGCTATAGCTGATATGATGGCTTACTGCAAATCAGATGTTTACACTGTAAACTGTGGCATGGCGTATGGTCAAGCTGCAATGCTACTATCACTTGGAGCCAAGGGTTATCGTGCTGTACAGCCTAATTCCTCTACTAAATTATATTTGCCAAAAGTCAACAGATCAAGCGGGGCTGTTATAGATATGTGGATTAAGGCGAAGGAACTTGATGCAAATACCGAGTATTATATTGAGCTACTGGCTAAGGGAGTGGGAAAAACTAAGGAAGAAGTAAACAAAGATGTCCAACGACCGAAATATTTCCAAGCACAAGAAGCTATAGACTATGGCATTGCTGACAAGATAATTAGCCCACAAGACGATGCATTCGAGAAACGGAATTATGATGAGATGCTTGCTCAGTCAAGAGCAATGAGAAAACGCCCGGGAGGCAATCCACAAGCTGCCCCCTCTGGATTTAGGTGA 1188 43.1 MASSLLSAPPSSPAAESRTICHLVPSISLPKSSFLCGCNNLLSSSTRSLSCSRRSGQRRSFKSPVAEKSFDHIPKQFREENLKDGVMDNYNNTPQYLYGLSPSQMDMFMTEDNPVRGQSALVTEENISSAHNYLNHGGMWSMSGMNGKGPSKYSMSVSMYRGGGRGYGRPRTAPPDLPSLLLDARICYLGMPIVPAVTELIVAQFMWLDYDNPSKPIYLYINSSGTQNEKMETVGSETEAYAIADMMAYCKSDVYTVNCGMAYGQAAMLLSLGAKGYRAVQPNSSTKLYLPKVNRSSGAVIDMWIKAKELDANTEYYIELLAKGVGKTKEEVNKDVQRPKYFQAQEAIDYGIADKIISPQDDAFEKRNYDEMLAQSRAMRKRPGGNPQAAPSGFR 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38194347 38198002 - Bma021693.1 Bma05g00652 82736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00652 395 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 62 387 - -
Bma05g00652 395 MobiDBLite consensus disorder prediction 374 395 - -
Bma05g00652 395 PRINTS Clp protease catalytic subunit P signature 176 191 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bma05g00652 395 PRINTS Clp protease catalytic subunit P signature 256 273 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bma05g00652 395 PRINTS Clp protease catalytic subunit P signature 335 354 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bma05g00652 395 PRINTS Clp protease catalytic subunit P signature 216 236 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bma05g00652 395 Gene3D - 165 363 - -
Bma05g00652 395 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 62 387 IPR023562 -
Bma05g00652 395 CDD S14_ClpP_2 176 356 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bma05g00652 395 Pfam Clp protease 179 358 IPR023562 -
Bma05g00652 395 SUPERFAMILY ClpP/crotonase 171 361 IPR029045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00652 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - mnt:21387209 609.757
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01643 Bma-Chr1:44666701 Bma05g00652 Bma-Chr5:38194347 2.43E-54 dispersed
Bma05g00278 Bma-Chr5:7770137 Bma05g00652 Bma-Chr5:38194347 2.43E-54 dispersed
Bma05g00652 Bma-Chr5:38194347 Bma01g01135 Bma-Chr1:12029936 8.99E-28 dispersed
Bma05g00652 Bma-Chr5:38194347 Bma05g00654 Bma-Chr5:38372540 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g695 Blo02g00932 . . Bda08g00678 . . Bma05g00652 . . Cmo11g01416 . . . . . Cpe04g00324 . . . . . . . . . . . . . . . . . . . . Csa07g00689 . Cme01g00116 . . . . . Bpe05g00474 . . . . . Cma11g01702 . Car11g01140 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011358 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31