Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00655 ATGATGGTGGCTGCCATTTCTGAAGCAGCTTCAAAGTACCTGCCTAACCCCAGACCAAGCCCACGACCACAGGAGGAACGGCAACAACAAGTCCCTTTTCAGAACGAATCGATTCCATCGGAGAAAGACAATGGCGTGCCTCAGAAAAGACCTAGGGGTAGACAAGTCTCTTCCAGGTATATGTCTCCTTCTCCTTCTACTTCTACTTCCACTTCTTCGACAAACTCCTCGTATTCTTCTTCGAGACGATGCGCGTCTCCCTTGGTTTCGCGGTCAATAAATCTCACTCCCGCGTCTACTCCGTTGCCTTCGACGGCTCCAAAGCGATCGCAATCAGTCGACCGAAAGCGACCTGCCACTCCTAGGTCTGTGGTCACGGACTTGAAGCAAAGCAACGCCCGCGAGGTCTCAGCGGCTTCGAAGCTTTTGACCACTTCGACTCGGAGCTTGTCAGTTTCCTTTCAGGGGGAGTCGTTTTCCCTCCCAATTAGTAAGACAAAGACAGCAGCACCTCCGAATACGAGCAATGCAAGGAAGGTGACTCCAGAGAGGCGGAGGTCGACGCCAATTAGAGGGAAGGGCGATGGAAATGCAGATCAGGTGGAGAATTCGAAGCCTGTAGATCAACATCGATGGCCAGGTAGAACTCGGGGAGTGAATTTGGGTCCTAACTTGTTGGGAAGGAGTTTAGATTGCTCTGGAGACGCTAGGAAGGTCTTTGGGATTGGATCTGGAAATGTGATTCGTACATTAAGGCAGTCAATTGTAGATGACAGCAGAAGAGCTTCTTTTGATGGGAGATTAAGCTTAGATTTAGGGAATGCAGGGTTTTTGAAAGTGGCCCAGAAAAACTCAAGTGAATCTTCTGTGGCATCTGATCTCATTCCCTCTGATAACGATAGTGTTTCCTCTGGTAGCACTGCAGGAATGCAAGACTTTGAGGAGGTTGGAAAAGGTCGAACTGGGTCCAGAGGGATTGTTTCCTCGTCAAAATTTTGGCAGGAGACAAATAGCCGAATGCGGCGCTTTCATGACCCAGGTTCTCCATTGTCGACCAGTCCTGGGTCGAGATTGGCAGGCCCATCAAAGTTTGTTCAGTCGAAAAAGGCTTCTACTGATAGTCAATTGTCATCTCCAAGAACAATGGCTTCACCTGTTCGACCAGCCACCAGGCCTGCATCACCTAGTAAACTTTGGACATCTTCAACACCATCTCCATCAAGAGGACTCGCCAGTCCTTCGCGTGTAAGAAATGCATCTAATGGATCATTGACTAGTAATTCGAGCAATCCATCTTCAATTCTTAGTTTTGCTGTTGATATTCGAAGAGGTAGGATGGGGGAAGATCACTTAGTTGATGCACATATGTTGAGGCTTCTGTATAATTGTTACTTGCAATGGCGATTTGTCAATGCAAGGGCGGACAATTCTTTCTTGGTGCAGGGACTGAATGCAGAGAAAAATTTGTGGAATGCATGGGTCAAAATTTCAGAATTGCGGCATTCTGTTACACTTAAAAGAATCAAATTATTTTTGCTCAGGAAAAAGTTGAAGCTAACTTCAATCCTCAAGGGACAAATGGATTATTTGGAAGAATGGGCACTCTTAGACAGAGATCACTCCAATTCTTTACTTGGAGCTACCAAGGCTTTGGAGGCCAGCATTCTCCGTCTGCCAGTCTCCGGAAAAGCAGTAGTGGATATTCAAACTTTGAAAGATGCTGTGAGCTCTGCAGTTGATGTTATGCAGGCAATGGCGTCCTCCATATGCTCTCTTTTGTCAAAGGTGGAGGAAATAAATTCTGTGGTGACAGAGCTAGCGAAGGTGACCTCTCATGAGAGGATTTTGCTTCATGAATGCAAAGACTTTTTGTCCACTTTAGCTACCATGCAGGTCAAAGACTGTAGCTTGAGAACTCACATATTACAACTGAATCGCGTAGAAACTTCTTCCCAGAGCCTGACAACACGTGTGTAG 1977 46.64 MMVAAISEAASKYLPNPRPSPRPQEERQQQVPFQNESIPSEKDNGVPQKRPRGRQVSSRYMSPSPSTSTSTSSTNSSYSSSRRCASPLVSRSINLTPASTPLPSTAPKRSQSVDRKRPATPRSVVTDLKQSNAREVSAASKLLTTSTRSLSVSFQGESFSLPISKTKTAAPPNTSNARKVTPERRRSTPIRGKGDGNADQVENSKPVDQHRWPGRTRGVNLGPNLLGRSLDCSGDARKVFGIGSGNVIRTLRQSIVDDSRRASFDGRLSLDLGNAGFLKVAQKNSSESSVASDLIPSDNDSVSSGSTAGMQDFEEVGKGRTGSRGIVSSSKFWQETNSRMRRFHDPGSPLSTSPGSRLAGPSKFVQSKKASTDSQLSSPRTMASPVRPATRPASPSKLWTSSTPSPSRGLASPSRVRNASNGSLTSNSSNPSSILSFAVDIRRGRMGEDHLVDAHMLRLLYNCYLQWRFVNARADNSFLVQGLNAEKNLWNAWVKISELRHSVTLKRIKLFLLRKKLKLTSILKGQMDYLEEWALLDRDHSNSLLGATKALEASILRLPVSGKAVVDIQTLKDAVSSAVDVMQAMASSICSLLSKVEEINSVVTELAKVTSHERILLHECKDFLSTLATMQVKDCSLRTHILQLNRVETSSQSLTTRV 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38435762 38442009 - Bma021697.1 Bma05g00655 82739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00655 658 MobiDBLite consensus disorder prediction 163 220 - -
Bma05g00655 658 MobiDBLite consensus disorder prediction 1 126 - -
Bma05g00655 658 PANTHER AUGMIN FAMILY MEMBER 37 651 - -
Bma05g00655 658 MobiDBLite consensus disorder prediction 23 42 - -
Bma05g00655 658 PANTHER QWRF MOTIF-CONTAINING PROTEIN 2 37 651 - -
Bma05g00655 658 Pfam QWRF family 301 617 IPR007573 -
Bma05g00655 658 MobiDBLite consensus disorder prediction 286 310 - -
Bma05g00655 658 MobiDBLite consensus disorder prediction 349 384 - -
Bma05g00655 658 MobiDBLite consensus disorder prediction 394 430 - -
Bma05g00655 658 MobiDBLite consensus disorder prediction 55 109 - -
Bma05g00655 658 MobiDBLite consensus disorder prediction 163 178 - -
Bma05g00655 658 MobiDBLite consensus disorder prediction 286 430 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00655 - - - cmo:103495301 786.563
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00334 Bma-Chr1:2726640 Bma05g00655 Bma-Chr5:38435762 1.68E-91 dispersed
Bma01g00515 Bma-Chr1:4267040 Bma05g00655 Bma-Chr5:38435762 1.78E-34 dispersed
Bma05g00065 Bma-Chr5:2502741 Bma05g00655 Bma-Chr5:38435762 2.38E-109 dispersed
Bma05g00066 Bma-Chr5:2522595 Bma05g00655 Bma-Chr5:38435762 1.30E-130 dispersed
Bma05g00655 Bma-Chr5:38435762 Bma12g00758 Bma-Chr12:34540617 8.35E-24 dispersed
Bma05g00655 Bma-Chr5:38435762 Bma06g00955 Bma-Chr6:45847014 2.95E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g691 Blo02g00934 Blo03g00075 Bda06g01204 . Bpe07g00273 . Bma05g00655 . Cmo19g00571 Cmo11g01414 . . . . . Cpe04g00322 Cpe15g00445 . . . . . . . Cla02g00676 Cam02g0709 Cec02g0721 Cco02g0742 Clacu02g0716 Cmu02g0713 Cre02g1027 . . Cone3ag1024 Cone10ag1039 Lsi03g00569 Csa07g00691 . Cme01g00114 . . . . . Bpe05g00476 . . . . . Cma11g01704 Cma19g00558 Car11g01138 Car19g00416 . . . . . . . . . . . . . . . . . . Chy01g00125 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005063 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00655 Bma_Chr05 FPKM 2.028986 2.751806 2.761907 2.84164 3.365566 2.032606 3.598455 2.213062 2.004686 2.454904