Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00672 ATGGCAGAGGCTAATCACAGTAATATTTCTCCAGCAGCAGTGAGTGGTGACATTGAAAAATGTACACGTCCCTCTCCAAGTTCTTTTGGCCCAAGTCATCTGCACAATGAACCTGCAAAGCAGAATTACACAGAAACATCAAATTTTGTCGATGAAGTTTCGCAATTTTCTGATGATATAGCAGAGAATTCTGCAGCTGAAAAATTGGAATTGTCTTATGAGATTCTCATTAGAAATCATCGATGCAAGAATAGTTCATACCTCAATCAAATTACTCCAGAACAAACACATGAATCTGTTCATACAAGTGTGCTTATTGAATCAACAGAACAAAAACATGAATCAATTAAAAGGGCCGTGCCAATATCTAACGTTGATGGGGATCAATCTTTAGTATGTTCTCATAATGTGAACCAAGATTACTTGGCACAAGCTTTGGAGATTTCTCTTGATGTGAAAAGAAACAGTCAGATTGATGATAAGAGACTAGGTGATGATGAGGGTTGCTCTACAGGGACAACGGGGAAACTGTTGAACAATCTATCAGAGTTGAATTATCATGACATTGAATCGGTAAAAAATCTGACACAAAAAACTAGCCCTGAAGAACAGACAGAAGTCCAACATAGTATATTGCAACAGACACAAGTAGAGGTCTCTGAAGAACTTTTAAGTAAACTGTCAGAGAAAAATCATCTCAGTGATTCTGAGTTTGCTCAAAATAATCCAGCTGGGGTTGATGTTATTCAAGAATTTGAGCCACATTTTGCTGATTGTTCTCTTGATGATGTTCTTAAACTTCCTTTTGTAGATGCATCAGATTCAGATAATCAGTTAAAATCATTTGTTGAAGATAGCATTAACGAGTTAAAAACACCAATTAAAAGATCAGCCAAATATTCTAAACAAGCTAACTGTCAAGCTTCAAAATCTAGACGGAAAAAATATATATTGAGATCACTGGGTCACACTGACAGGATATTGCGCTCAAAAACACAAGGGAATGCCACAGCTTCTAAACCACGTAATCCTGTCAGTAGTGTTAGATGTGAAGGAGATGGAAAAGGTAGGAAGAAGGAAAGAAGAAAGAAGACTAAAGTAGCAGACAAGTTTTCAAAAATTAGAAATTGCCTGAGATATTTCCTTAATCGAATGGCATATGAACAAAGCTTCATTGCTGCTTATTCTGGTGAAGGTTGGAAAGGATACAGCTTAGAGAAGTTAAAGCCAGAGAAGGAGCTTCAACGGGCCAAAAGTGAAATAATGCGACGCAAATTGAAAATAAGAGATCTTTTTAAACACCTCGATTCACTTTGTGTTAATGGAAGGTTTCAAGAGTCTCTGTTTGATTCTGAAGGGCAAATTGACAGTGAGGATATATTCTGTGCGACATGTGGATCCAAAGAAATGTCTGCTAATAATGACATTATACTCTGTGATGGTGCTTGTGATCGTGGTTTTCACCAGCTCTGTTTAGACCCACCATTGCTGAATGAAGATATTCCCCCAGATGATGATGGTTGGCTATGCCCTGGTTGTGATTGCAAAGTTGACTGCATTGATTTGCTTAATGACGCTCAAGGAACCAATTATTCTCTCAATGACAGTTGGGAGAATATTTATCCTGAGGCTGCTGTTGTAGCTGCTGGACAAAGTCATGATCTGACGTTGGGTCTCCCTTCAGATGATTCGGATGATAATGATTTTGACCCACATGATCCAGAAGCTGATGAGCAGAGAGATGAATCAAGTCCTGTTGTATCTGATAATAATATTGAATCTGAAAAATTGGTGGCTTCGCCTAAAAACAACCAATATCTGGGACTTCCTTCTGATGATTCGGGCGATGATGATTATAATCCCGGGGCTCCAGATACTGAAGAGAAGATTAAGTCAGAAAGTTCAAGTTCTGATTTTACTTCTGATTCTGAGAATCTGGCAGCCATTTTTGAAGATGATAGGCCTTCTAGGAATGAAGATGATTCTGTCTCTTCATCTGACAATAATACCAGTTCTCATATAGGCATTGACAAAAAAAGCTGCAGACGTGGTCTAGGAAAGCATTTATTAAATGATGAGCTTTCTTCTCTACTAAACTTGGAACCTCTTAATGATGGACTTTCACCTATTGCCAGCAGACGGCATGTGGAACGATTGGACTATAAGAAGCTACATGATGTAAGTCTAATGTTTTTCATTTTCTATATTCAGTTAGTGTTGGGGTTACCTTATTTTTGTGTGTGGTTCCACACTATCAATGAATGA 2265 38.01 MAEANHSNISPAAVSGDIEKCTRPSPSSFGPSHLHNEPAKQNYTETSNFVDEVSQFSDDIAENSAAEKLELSYEILIRNHRCKNSSYLNQITPEQTHESVHTSVLIESTEQKHESIKRAVPISNVDGDQSLVCSHNVNQDYLAQALEISLDVKRNSQIDDKRLGDDEGCSTGTTGKLLNNLSELNYHDIESVKNLTQKTSPEEQTEVQHSILQQTQVEVSEELLSKLSEKNHLSDSEFAQNNPAGVDVIQEFEPHFADCSLDDVLKLPFVDASDSDNQLKSFVEDSINELKTPIKRSAKYSKQANCQASKSRRKKYILRSLGHTDRILRSKTQGNATASKPRNPVSSVRCEGDGKGRKKERRKKTKVADKFSKIRNCLRYFLNRMAYEQSFIAAYSGEGWKGYSLEKLKPEKELQRAKSEIMRRKLKIRDLFKHLDSLCVNGRFQESLFDSEGQIDSEDIFCATCGSKEMSANNDIILCDGACDRGFHQLCLDPPLLNEDIPPDDDGWLCPGCDCKVDCIDLLNDAQGTNYSLNDSWENIYPEAAVVAAGQSHDLTLGLPSDDSDDNDFDPHDPEADEQRDESSPVVSDNNIESEKLVASPKNNQYLGLPSDDSGDDDYNPGAPDTEEKIKSESSSSDFTSDSENLAAIFEDDRPSRNEDDSVSSSDNNTSSHIGIDKKSCRRGLGKHLLNDELSSLLNLEPLNDGLSPIASRRHVERLDYKKLHDVSLMFFIFYIQLVLGLPYFCVWFHTINE 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39309718 39312936 + Bma021722.1 Bma05g00672 82756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00672 754 MobiDBLite consensus disorder prediction 555 677 - -
Bma05g00672 754 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 216 726 - -
Bma05g00672 754 Pfam PHD-finger 461 516 IPR019787 -
Bma05g00672 754 ProSiteProfiles Zinc finger PHD-type profile. 459 516 IPR019787 -
Bma05g00672 754 CDD PHD_PRHA_like 461 513 IPR045876 -
Bma05g00672 754 SMART PHD_3 461 514 IPR001965 -
Bma05g00672 754 MobiDBLite consensus disorder prediction 328 365 - -
Bma05g00672 754 PANTHER HOMEOBOX PROTEIN HAT3.1 216 726 - -
Bma05g00672 754 ProSitePatterns Zinc finger PHD-type signature. 462 513 IPR019786 -
Bma05g00672 754 MobiDBLite consensus disorder prediction 21 39 - -
Bma05g00672 754 MobiDBLite consensus disorder prediction 647 661 - -
Bma05g00672 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 455 518 IPR013083 -
Bma05g00672 754 MobiDBLite consensus disorder prediction 1 39 - -
Bma05g00672 754 MobiDBLite consensus disorder prediction 328 344 - -
Bma05g00672 754 SUPERFAMILY FYVE/PHD zinc finger 451 519 IPR011011 -
Bma05g00672 754 MobiDBLite consensus disorder prediction 585 610 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00392 Bma-Chr1:3227619 Bma05g00672 Bma-Chr5:39309718 9.81E-50 transposed
Bma12g00267 Bma-Chr12:3522956 Bma05g00672 Bma-Chr5:39309718 2.34E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57319 PF00628 PHD 4.90E-11 CL0390 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00672 - - qlo:115967836 474.937