Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma05g00672 | ATGGCAGAGGCTAATCACAGTAATATTTCTCCAGCAGCAGTGAGTGGTGACATTGAAAAATGTACACGTCCCTCTCCAAGTTCTTTTGGCCCAAGTCATCTGCACAATGAACCTGCAAAGCAGAATTACACAGAAACATCAAATTTTGTCGATGAAGTTTCGCAATTTTCTGATGATATAGCAGAGAATTCTGCAGCTGAAAAATTGGAATTGTCTTATGAGATTCTCATTAGAAATCATCGATGCAAGAATAGTTCATACCTCAATCAAATTACTCCAGAACAAACACATGAATCTGTTCATACAAGTGTGCTTATTGAATCAACAGAACAAAAACATGAATCAATTAAAAGGGCCGTGCCAATATCTAACGTTGATGGGGATCAATCTTTAGTATGTTCTCATAATGTGAACCAAGATTACTTGGCACAAGCTTTGGAGATTTCTCTTGATGTGAAAAGAAACAGTCAGATTGATGATAAGAGACTAGGTGATGATGAGGGTTGCTCTACAGGGACAACGGGGAAACTGTTGAACAATCTATCAGAGTTGAATTATCATGACATTGAATCGGTAAAAAATCTGACACAAAAAACTAGCCCTGAAGAACAGACAGAAGTCCAACATAGTATATTGCAACAGACACAAGTAGAGGTCTCTGAAGAACTTTTAAGTAAACTGTCAGAGAAAAATCATCTCAGTGATTCTGAGTTTGCTCAAAATAATCCAGCTGGGGTTGATGTTATTCAAGAATTTGAGCCACATTTTGCTGATTGTTCTCTTGATGATGTTCTTAAACTTCCTTTTGTAGATGCATCAGATTCAGATAATCAGTTAAAATCATTTGTTGAAGATAGCATTAACGAGTTAAAAACACCAATTAAAAGATCAGCCAAATATTCTAAACAAGCTAACTGTCAAGCTTCAAAATCTAGACGGAAAAAATATATATTGAGATCACTGGGTCACACTGACAGGATATTGCGCTCAAAAACACAAGGGAATGCCACAGCTTCTAAACCACGTAATCCTGTCAGTAGTGTTAGATGTGAAGGAGATGGAAAAGGTAGGAAGAAGGAAAGAAGAAAGAAGACTAAAGTAGCAGACAAGTTTTCAAAAATTAGAAATTGCCTGAGATATTTCCTTAATCGAATGGCATATGAACAAAGCTTCATTGCTGCTTATTCTGGTGAAGGTTGGAAAGGATACAGCTTAGAGAAGTTAAAGCCAGAGAAGGAGCTTCAACGGGCCAAAAGTGAAATAATGCGACGCAAATTGAAAATAAGAGATCTTTTTAAACACCTCGATTCACTTTGTGTTAATGGAAGGTTTCAAGAGTCTCTGTTTGATTCTGAAGGGCAAATTGACAGTGAGGATATATTCTGTGCGACATGTGGATCCAAAGAAATGTCTGCTAATAATGACATTATACTCTGTGATGGTGCTTGTGATCGTGGTTTTCACCAGCTCTGTTTAGACCCACCATTGCTGAATGAAGATATTCCCCCAGATGATGATGGTTGGCTATGCCCTGGTTGTGATTGCAAAGTTGACTGCATTGATTTGCTTAATGACGCTCAAGGAACCAATTATTCTCTCAATGACAGTTGGGAGAATATTTATCCTGAGGCTGCTGTTGTAGCTGCTGGACAAAGTCATGATCTGACGTTGGGTCTCCCTTCAGATGATTCGGATGATAATGATTTTGACCCACATGATCCAGAAGCTGATGAGCAGAGAGATGAATCAAGTCCTGTTGTATCTGATAATAATATTGAATCTGAAAAATTGGTGGCTTCGCCTAAAAACAACCAATATCTGGGACTTCCTTCTGATGATTCGGGCGATGATGATTATAATCCCGGGGCTCCAGATACTGAAGAGAAGATTAAGTCAGAAAGTTCAAGTTCTGATTTTACTTCTGATTCTGAGAATCTGGCAGCCATTTTTGAAGATGATAGGCCTTCTAGGAATGAAGATGATTCTGTCTCTTCATCTGACAATAATACCAGTTCTCATATAGGCATTGACAAAAAAAGCTGCAGACGTGGTCTAGGAAAGCATTTATTAAATGATGAGCTTTCTTCTCTACTAAACTTGGAACCTCTTAATGATGGACTTTCACCTATTGCCAGCAGACGGCATGTGGAACGATTGGACTATAAGAAGCTACATGATGTAAGTCTAATGTTTTTCATTTTCTATATTCAGTTAGTGTTGGGGTTACCTTATTTTTGTGTGTGGTTCCACACTATCAATGAATGA | 2265 | 38.01 | MAEANHSNISPAAVSGDIEKCTRPSPSSFGPSHLHNEPAKQNYTETSNFVDEVSQFSDDIAENSAAEKLELSYEILIRNHRCKNSSYLNQITPEQTHESVHTSVLIESTEQKHESIKRAVPISNVDGDQSLVCSHNVNQDYLAQALEISLDVKRNSQIDDKRLGDDEGCSTGTTGKLLNNLSELNYHDIESVKNLTQKTSPEEQTEVQHSILQQTQVEVSEELLSKLSEKNHLSDSEFAQNNPAGVDVIQEFEPHFADCSLDDVLKLPFVDASDSDNQLKSFVEDSINELKTPIKRSAKYSKQANCQASKSRRKKYILRSLGHTDRILRSKTQGNATASKPRNPVSSVRCEGDGKGRKKERRKKTKVADKFSKIRNCLRYFLNRMAYEQSFIAAYSGEGWKGYSLEKLKPEKELQRAKSEIMRRKLKIRDLFKHLDSLCVNGRFQESLFDSEGQIDSEDIFCATCGSKEMSANNDIILCDGACDRGFHQLCLDPPLLNEDIPPDDDGWLCPGCDCKVDCIDLLNDAQGTNYSLNDSWENIYPEAAVVAAGQSHDLTLGLPSDDSDDNDFDPHDPEADEQRDESSPVVSDNNIESEKLVASPKNNQYLGLPSDDSGDDDYNPGAPDTEEKIKSESSSSDFTSDSENLAAIFEDDRPSRNEDDSVSSSDNNTSSHIGIDKKSCRRGLGKHLLNDELSSLLNLEPLNDGLSPIASRRHVERLDYKKLHDVSLMFFIFYIQLVLGLPYFCVWFHTINE | 754 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 39309718 | 39312936 | + | Bma021722.1 | Bma05g00672 | 82756 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma05g00672 | 754 | MobiDBLite | consensus disorder prediction | 555 | 677 | - | - | |
Bma05g00672 | 754 | PANTHER | POLYCOMB-LIKE TRANSCRIPTION FACTOR | 216 | 726 | - | - | |
Bma05g00672 | 754 | Pfam | PHD-finger | 461 | 516 | IPR019787 | - | |
Bma05g00672 | 754 | ProSiteProfiles | Zinc finger PHD-type profile. | 459 | 516 | IPR019787 | - | |
Bma05g00672 | 754 | CDD | PHD_PRHA_like | 461 | 513 | IPR045876 | - | |
Bma05g00672 | 754 | SMART | PHD_3 | 461 | 514 | IPR001965 | - | |
Bma05g00672 | 754 | MobiDBLite | consensus disorder prediction | 328 | 365 | - | - | |
Bma05g00672 | 754 | PANTHER | HOMEOBOX PROTEIN HAT3.1 | 216 | 726 | - | - | |
Bma05g00672 | 754 | ProSitePatterns | Zinc finger PHD-type signature. | 462 | 513 | IPR019786 | - | |
Bma05g00672 | 754 | MobiDBLite | consensus disorder prediction | 21 | 39 | - | - | |
Bma05g00672 | 754 | MobiDBLite | consensus disorder prediction | 647 | 661 | - | - | |
Bma05g00672 | 754 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 455 | 518 | IPR013083 | - | |
Bma05g00672 | 754 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Bma05g00672 | 754 | MobiDBLite | consensus disorder prediction | 328 | 344 | - | - | |
Bma05g00672 | 754 | SUPERFAMILY | FYVE/PHD zinc finger | 451 | 519 | IPR011011 | - | |
Bma05g00672 | 754 | MobiDBLite | consensus disorder prediction | 585 | 610 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00392 | Bma-Chr1:3227619 | Bma05g00672 | Bma-Chr5:39309718 | 9.81E-50 | transposed | |
Bma12g00267 | Bma-Chr12:3522956 | Bma05g00672 | Bma-Chr5:39309718 | 2.34E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57319 | PF00628 | PHD | 4.90E-11 | CL0390 | Bma | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma05g00672 | - | - | qlo:115967836 | 474.937 |