Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00683 ATGGGAGGTAACCAGAAGAGTCACAGTGCGAATCCAAATGATTATAAGCTTCTTGAGGAGGTTGGACATGGCGCTAGTGCGACGGTTTACAGAGCGATCTATCTTCCGCTCAATGAAGTGGTGGCTGTCAAGTGCTTGGATCTCGATCGTTGCAATAGCAATCTGGATGACATTCGAAGGGAGGCCCAAACTATGAGTTTAATAGATCATCCAAATGTTGTAAGAGCATATTGCTCATTTGTTGTTGAACGGAACCTATGGGTCATTATGCCATTTATGGCAGAGGGTTCCTGTTTACACCTTATGAAGATAGCATATCCAGATGGCTTTGAAGAGGATGTTATTTGTTCTATACTAAAAGAAACTCTTAAAGCTTTGGACTACTTTCATTGCCAGGGACATATTCACAGAGATGTAAAGGCTGGAAATATACTACTCGATAGCAACGGAGTGGTAAAGCTTGCTGACTTTGGTGTTACTGCTTGCATGTTTGACTCTGGTGATAGACAACGATCTAGAAATACTTTCGTTGGGACTCCATGCTGGATGGCACCAGAGGTATTGCAACCAGGAAGTGGATATAATTTCAAGGCTGATATCTGGTCATTTGGTATAACAGCATTGGAGTTGGCTCATGGTCATGCACCATTTTCGAAATATCCTCCAATGAAGGTACTTCTCATGACCATCCAAAATTCTCCTCCAGGTCTAGATTATGATCGTGACAAAAAATTCTCTAAGTCTTTCAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAACGAAGAGACCTACAGCAGAAAAGCTGTTAAAACACAACTTTTTCAAGAGTGCAAAACCTCCGGAGCTTTCTGTGAAGAAATTATTTGATGACTTACCTCCTCTTTGGAATCGTGTGAAAGCTCTCCAGCTTAAAGATGCAGCGCAGCTAGCTCTAAAGAAAATGCCGTCATCCGAACAAGAAGCGTTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAACTTTGATATTGAGGATTTAAAAGCCCAAGCCTCACTGGTGCGTGATGATGAGGATGAGGATGATGATTTGGCAGATACGAGGGAACAGGAAGAAATCATCAAGTCAATTGTTAGTGATAAGGTGCTTGGATTTAACTCATTTAACTTATTAGTAAAATCAGTTGGCGTGGAGTTGGTGCAAGGTGAATCGTTCAGCAAAAAGGGTAAGACAACGGAAAACGAGTGGCTTGAATCTGGGACCACCCAAGAGAAAAGTGGTTTGAAGAAAAGCGGTACTAGCACTGAAACATCATCTTTTACATCCAGTCAAGACATTGTTCAATCAAAGAATAAAACCCAAATGCCAAAAAGTCGGCAAACGCAGAGCGGGCCGCTAATGCCTGGTGTTGTGCTCAATCATTCTTTATCAGAAAGAGCTCGTAATCCAGAGAGGGATGAGTATGAAATTCAACCAACTGCAGAAAAATTTCAGCGTGATCTGCGACAGACACCAAGTTTTAGTGGTCCTTTAATGCTGCCAAACCGTGCTTCAGCAAACAGCTTATCAGCACCTATAAAATCTTCTGGAGGATATAGAGATTCATTAGATGAAAAGTCAAAGGCTAATCTTGTGCAAATTAAAGGGCGGTTTTCTGTGACGTCAGAAAACTTAGATCTTGCCAAGGATATTCCATTAAGTACAGTACCACGTCGAACTTCCCAGGGATCCCCACTAAGAAAATCAGCTAGTGTCGGTGATTGGGTATTTGACTCAAAACAAATGCTCGTCGGTCAATCCCAAAGGGAGCTTTCCAACAGTAATATACCCGCTACACTTCTCATGACTCATCTGCAGACTCTTTTTCAGCAGAACTCAATTCAACAGGATCTTATATTCAATTTGTTTAATACCCTCCAGCCAACTGACGTAGCGGATGCTACTCAAAATGGAAAGTTGCCTCCATTGCCTCGGAGCTCGGAGAACAATGGAAGTGTAAGTATATTCCATTGTGTAATCTTGTTACAACATAATATTGGCCACCATCTTCTTTGTCATTTATGA 2052 41.81 MGGNQKSHSANPNDYKLLEEVGHGASATVYRAIYLPLNEVVAVKCLDLDRCNSNLDDIRREAQTMSLIDHPNVVRAYCSFVVERNLWVIMPFMAEGSCLHLMKIAYPDGFEEDVICSILKETLKALDYFHCQGHIHRDVKAGNILLDSNGVVKLADFGVTACMFDSGDRQRSRNTFVGTPCWMAPEVLQPGSGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNSPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPTAEKLLKHNFFKSAKPPELSVKKLFDDLPPLWNRVKALQLKDAAQLALKKMPSSEQEALSQSEYQRGVSAWNFDIEDLKAQASLVRDDEDEDDDLADTREQEEIIKSIVSDKVLGFNSFNLLVKSVGVELVQGESFSKKGKTTENEWLESGTTQEKSGLKKSGTSTETSSFTSSQDIVQSKNKTQMPKSRQTQSGPLMPGVVLNHSLSERARNPERDEYEIQPTAEKFQRDLRQTPSFSGPLMLPNRASANSLSAPIKSSGGYRDSLDEKSKANLVQIKGRFSVTSENLDLAKDIPLSTVPRRTSQGSPLRKSASVGDWVFDSKQMLVGQSQRELSNSNIPATLLMTHLQTLFQQNSIQQDLIFNLFNTLQPTDVADATQNGKLPPLPRSSENNGSVSIFHCVILLQHNIGHHLLCHL 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39699566 39711377 - Bma021740.1 Bma05g00683 82767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00683 683 CDD STKc_OSR1_SPAK 13 276 - -
Bma05g00683 683 SMART serkin_6 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00683 683 ProSiteProfiles Protein kinase domain profile. 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00683 683 SUPERFAMILY Protein kinase-like (PK-like) 12 332 IPR011009 -
Bma05g00683 683 MobiDBLite consensus disorder prediction 411 464 - -
Bma05g00683 683 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Bma05g00683 683 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Bma05g00683 683 MobiDBLite consensus disorder prediction 404 466 - -
Bma05g00683 683 Pfam Protein kinase domain 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00683 683 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 2 663 - -
Bma05g00683 683 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 2 663 - -
Bma05g00683 683 Gene3D Transferase(Phosphotransferase) domain 1 96 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00683 - - - jre:108993778 1013.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00683 Bma-Chr5:39699566 Bma10g00841 Bma-Chr10:15014080 8.37E-172 dispersed
Bma12g00255 Bma-Chr12:3305310 Bma05g00683 Bma-Chr5:39699566 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g00255 . 1 577 MAP Kinase Kinase Kinase Kinase AT1G53165 64.2 2.8e-190 662.1
Bma01g00127 . 223 488 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.3e-67 253.8
Bma14g00255 . 1 577 MAP Kinase Kinase Kinase Kinase AT3G15220 67.3 3.1e-205 711.8
Bma01g00127 . 223 488 MAP Kinase Kinase Kinase Kinase AT3G15220 50.2 6.7e-67 252.3
Bma01g00127 . 9 792 MAP Kinase Kinase Kinase Kinase AT1G69220 55.8 2.2e-218 755.7
Bma01g00975 . 1 662 MAP Kinase Kinase Kinase Kinase AT5G14720 64.0 4.2e-239 824.3
Bma12g00255 . 5 693 MAP Kinase Kinase Kinase Kinase AT4G24100 65.1 4.4e-242 834.3
Bma05g00683 . 5 662 MAP Kinase Kinase Kinase Kinase AT4G24100 66.2 1.4e-237 819.3
Bma05g00683 . 6 662 MAP Kinase Kinase Kinase Kinase AT4G10730 67.2 1.5e-239 825.9
Bma12g00255 . 6 694 MAP Kinase Kinase Kinase Kinase AT4G10730 65.4 1.1e-237 819.7
Bma10g00841 . 4 402 MAP Kinase Kinase Kinase Kinase AT1G70430 56.9 9.2e-129 457.6
Bma12g00255 . 2 401 MAP Kinase Kinase Kinase Kinase AT1G70430 54.0 1.8e-121 433.3
Bma05g00683 . 2 350 MAP Kinase Kinase Kinase Kinase AT1G70430 60.2 4.6e-120 428.7
Bma10g00841 . 1 678 MAP Kinase Kinase Kinase Kinase AT1G79640 58.7 3.1e-210 728.4
Bma01g00975 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 57.1 5.5e-100 361.7
Bma10g00841 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.1 3.8e-85 312.4
Bma05g00683 . 14 303 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 9.2e-79 291.2
Bma12g00255 . 12 303 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 5.0e-77 285.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005064 3 0 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66499 PF00069 Pkinase 3.90E-59 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00683 Bma_Chr05 FPKM 5.238193 7.062486 2.723079 3.103671 8.384528 7.195691 8.012835 10.157454 11.224922 12.877538