Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00690 ATGGATTCACATGAAGATGGGGTCTCCACCTCCGAGAGGCAGAAGAGGCGGCGGTGGAGGGCGGAAGGTTTTTTCTTCGTGTTAATTCAGTGGGGTGCGGTTCTCGTGCTCTCAGTCATTTCGTTCGTTTTGCTCTCGCTCTTTTTGGAATTTGTCGCGTCAGTAATCGCCAACTCGTCGATCACAAGCCATAGCGTTTCTATACCATCGAAGTGCAGGATTGTGTCCAGCACTGTTGATATTAGGTCATCTAAGGTCTGCGAAATTGGTTTGCTGAATTATAAAGCCAAGGATGTTTTTTACCCATTTGAAAGAAATAAATTTAGATGTCGTTATGATTACTATTGGGCTTCTGTGTTCAAGGTTGAGTTCATGGATCAGCTTTTTGGTCACAAACGGATTGCTTGGGCTGAAGCTCCAAATGAGGCCCTTCCTCTTGATTGTAGGCCTAATTTTGGAGTTGCATGGTTGACTAAAGATAAATTTAAGGTAAACGAATCATACGACTGTTGGTATGCATCTAGTATTTCCAAAGTTAGCTTCTACGATGATGGTTTTTCTAGTTGTCGAGCTCAAGATGATCCATCAAAGATTCAAATCATTGGGCCGTATTTCATCTGGTGCATAAATATTCTCAACTCCTGGCTGCATAGGTATGAAGGAGTAATCTCTTGGAGATGGGAAACAATGGCTGGAGTTGTCACTGGCTTTATTGCATCCTTGGTGACCTTAACCATCTTTAAGATCTTGCAACAATATATACGATGGTTACTCAATACCTGTTCCGTGAGGATGGTCGTTTGCCTTAATCGAGCTTGCTTATTTGTGGCGTACTTCTCCTTTATTGGTTGGCTGTCCATCCAGTATGGTAAAATGCTCAGCTTTCCTCAGATATCTAATGTATTTAAAGCTAGGTAG 918 42.27 MDSHEDGVSTSERQKRRRWRAEGFFFVLIQWGAVLVLSVISFVLLSLFLEFVASVIANSSITSHSVSIPSKCRIVSSTVDIRSSKVCEIGLLNYKAKDVFYPFERNKFRCRYDYYWASVFKVEFMDQLFGHKRIAWAEAPNEALPLDCRPNFGVAWLTKDKFKVNESYDCWYASSISKVSFYDDGFSSCRAQDDPSKIQIIGPYFIWCINILNSWLHRYEGVISWRWETMAGVVTGFIASLVTLTIFKILQQYIRWLLNTCSVRMVVCLNRACLFVAYFSFIGWLSIQYGKMLSFPQISNVFKAR 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40430735 40433748 - Bma021752.1 Bma05g00690 82774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00690 305 PANTHER OSJNBA0083N12.13 PROTEIN 1 301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00690 - - - csv:101211843 350.517
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g887 . . . Bda08g00652 Bpe05g00505 . . . Cmo06g00608 . . . . . . . . . . . . . . . Cla10g00106 Cam10g0102 Cec10g0109 Cco10g0111 Clacu10g0106 Cmu10g0954 Cre10g0365 . . . . Lsi07g01136 . . Cme06g02411 . . . . . . Bma05g00690 . . . . Cma06g00601 . Car06g00536 . . . . . . . . . . . . . . . . . . Csa03g00106 Chy06g02199 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011346 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00690 Bma_Chr05 FPKM 45.682827 50.090153 31.987253 31.985058 21.595337 22.660715 20.089739 39.30138 38.791199 36.390347