Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00693 ATGGCTACTAGGTTCTTAGTTTCAAAACTATTCCCCAGAAACCCCTTTCCATTTCAACCTTCATCTCAAAATTCTCTTCCTCTTTCTGGAATCCTCAGAAAGTTACACTCAGTTGTTGCCCCGCCGTGCCGTGACTGTGAGTTTCAGAAAATTCACCCTGCTCATTCCAGGGGCTTGGTATCTGCTCCTGAATTCGATGTTGGGGAATCTGGTTCGGCTTCTCTCTGCACTGATAGTCGTGTCCCCGCCACTGTGATTACTGGCTTTCTCGGCTCTGGAAAGACAACTCTGCTGAATCATATTTTAACATCTCAACACGGGAAGAGGATTGCTGTGATAGAAAATGAGTTTGGTGAGGTAGATATTGATGGATCTTTGGTTGCAAGCCATTCTTCTGTGACAGAAGACATTATTATGGTTAATAATGGTTGCCTTTGTTGCACCGTGAGAGGAGATCTGGTCAAAATGCTCTTGAAGCTGGTAAAGAATAAACGAGACAAATTCGACCATATTGTTATTGAAACTACAGGTCTCGCTAAACCAGCTCCGGTCATAGAAACTTTTTGTACAGATGAACTGGTTTCACAATATGTAAAATTGGACGGAGTTGTTACTCTTGTTGATTCCAAGCATGCAATGAAACATCTAAATGAAGTGAAGCCAAGATTTGTGGTGAATGAGGCTGTTGAGCAAGTCGCATATGCTGATCGAATAGTTATGAATAAGATAGATTTGGTGTCTGAAATAGAGCTGGAGGTACTCTTGCATAGGATAAAGCGATTTAATTTTGTAATTCTGGTGTTTTTTGTCCAGCACATTAATTCTATGGCTCAAATTAAGCTAGCTAAATTTGGATCTGTAGACATGGACTTCGTTTTGGGAGTGGGAGGATATGATCTGGAGAGTTTCCTTGGTACAAACTTTATTAAAAGGCTGCCTCATTTTACCTTTTGCTCGGTTCTTTCAGAGCACAAAAGAGGACATTCTCATGACCATTTACATGATTCCACCGTCTCCAGTGTTAGTGTCGTTTCTGAAGGGACACTCGATCTCGATGAGGTCGATGATTGGCTTGAAAGACTGATTGAAGAGAAAGGAGAGGAATTGTACAGAATGAAAGGAATTTTGTCCATTGCTAATTCCGAGCAGCGATACGTTTTTCAGGGGGTGCAATCGATATTGGATGGTTGCCCTGGAAAAACATGGGGGCCAGAAGAGAAGAGGATAAACAAACTAGTCTTTATTGGAAGAAATCTAGATGAAACTGCTTTGCGAAAAGGATTTAAAGGCTGTTTAGTATGA 1302 41.24 MATRFLVSKLFPRNPFPFQPSSQNSLPLSGILRKLHSVVAPPCRDCEFQKIHPAHSRGLVSAPEFDVGESGSASLCTDSRVPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGEVDIDGSLVASHSSVTEDIIMVNNGCLCCTVRGDLVKMLLKLVKNKRDKFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVVTLVDSKHAMKHLNEVKPRFVVNEAVEQVAYADRIVMNKIDLVSEIELEVLLHRIKRFNFVILVFFVQHINSMAQIKLAKFGSVDMDFVLGVGGYDLESFLGTNFIKRLPHFTFCSVLSEHKRGHSHDHLHDSTVSSVSVVSEGTLDLDEVDDWLERLIEEKGEELYRMKGILSIANSEQRYVFQGVQSILDGCPGKTWGPEEKRINKLVFIGRNLDETALRKGFKGCLV 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40479777 40485230 - Bma021756.1 Bma05g00693 82777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00693 433 CDD CobW-like 82 296 - -
Bma05g00693 433 PANTHER OSJNBA0083N12.6 PROTEIN 44 433 - -
Bma05g00693 433 SUPERFAMILY Hypothetical protein YjiA, C-terminal domain 338 432 - -
Bma05g00693 433 SMART CobW_C_3 338 432 IPR011629 -
Bma05g00693 433 Gene3D - 79 298 IPR027417 -
Bma05g00693 433 PANTHER COBW-RELATED 44 433 - -
Bma05g00693 433 Pfam Cobalamin synthesis protein cobW C-terminal domain 338 432 IPR011629 -
Bma05g00693 433 Gene3D - 319 432 IPR036627 -
Bma05g00693 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 272 IPR027417 -
Bma05g00693 433 Pfam CobW/HypB/UreG, nucleotide-binding domain 82 262 IPR003495 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00693 - - - jre:109014260 568.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00693 Bma-Chr5:40479777 Bma10g00833 Bma-Chr10:14666401 1.12E-140 dispersed
Bma05g00688 Bma-Chr5:39929685 Bma05g00693 Bma-Chr5:40479777 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g820 . . . Bda08g00649 Bpe05g00508 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00693 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy06g02189 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002951 2 0 2 3 2 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 2 1 2 2 2 1 2 4 4 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00693 Bma_Chr05 FPKM 48.394947 49.334507 22.156122 20.935917 55.073647 52.136456 58.205963 20.753984 20.18166 20.220669