Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00703 ATGGAAATAGCAGACAAGGCAGTGGGTGTCTTGCTATCGACTTTAAGCTTGTCGATATTTACTTATTATACCTTCTGGGTAATAATCCTGCCATTTGTAGATAGAGATCATTTCATCCATCATTATTTTCTGCCCCAAGAATATGCCATTTTTATACCTGTATTCGCTGGTGTGGTGCTTATCTGCTTCTTGGGCATATTTATTGGATTTGTGATGCTTAAATCCAGAAAAAAGAAGCAG 240 37.5 MEIADKAVGVLLSTLSLSIFTYYTFWVIILPFVDRDHFIHHYFLPQEYAIFIPVFAGVVLICFLGIFIGFVMLKSRKKKQ 80
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41006041 41006355 - Bma031200 Bma05g00703 82787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00703 80 Pfam Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) 4 78 IPR009914 GO:0019348|GO:0030176|GO:0030234
Bma05g00703 80 PANTHER DOLICHOL PHOSPHATE-MANNOSE BIOSYNTHESIS REGULATORY PROTEIN 1 79 - -
Bma05g00703 80 PANTHER DOLICHOL PHOSPHATE-MANNOSE BIOSYNTHESIS REGULATORY PROTEIN 1 79 IPR009914 GO:0019348|GO:0030176|GO:0030234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00703 K09658 DPM2; dolichol phosphate-mannose biosynthesis regulatory protein - sspl:121751983 142.895
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g727 . . . Bda08g00641 Bpe05g00518 . . . . . . . . . Sed02g0069 . . Bhi11g00009 Tan01g2215 Cmetu06g1490 . . Mch10g1683 . . . . . . . . . . . . . . . . . . . . . . Bma05g00703 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007943 1 5 2 1 1 1 2 1 1 1 1 0 1 1 1 2 0 1 2 1 1 1 1 1 1 0 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00703 Bma_Chr05 FPKM 9.565424 9.933871 11.799473 12.609474 9.400579 10.944345 8.716447 5.882094 7.109622 6.592784