Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00705 ATGGGTGAAGAGGGAGCGATTTCCCGAAGCGCCGGCTCGCAGGGGTCGGCGCCGCCGCCGATTCTAAACGCGAATGCGCCACCGCCGTTTCTGAGCAAGACGTACGATATGGTGGATGACTCTGCCACCGACGCGATCGTGTCGTGGAGCCACAGTAACAACAGCTTCGTGGTTTGGAACCCGCCGGAATTTTCTAGGGACCTCTTGCCGAAGTACTTTAAGCACAATAACTTCTCTAGCTTCGTTCGACAGCTCAACACATATGGTTTCAAGAAGGTTGATCCAGATCGCTGGGAATTTGCAAACGAAGGTTTCCTAAGGGGTCAGAAACACCTGCTTAAGAGCATCAATCGTCGAAAGCCTGCTCATGGACAAAGTCAACCACCACAGCAATCTCAAGTACAAAACTCATCTCCATCTGTGGGGGCTTGTGTAGAGGTTGGAAAGTTTGGTCTTGAGGAGGAGGTTGAGAGGCTTAAGAGAGACAAGAATGTGCTCATGCAGGAACTTGTCAGGCTTAGGCAGCAGCAACAGACTACTGATAGCCAGCTACAAGTTATGGTTCAGCGTTTGCAGGGAATGGAACAAAGGCAGCAGCAGATGATGTCATTCCTTGCAAAAGCCGTGCAAAGCCCTGGATTTTTATCTCAGTTTGTACAGCAGCAAAATGAGAGTAGTAGATGCATAAGTGAAGCCAACAAAAAGCGCAGGCTTAAGCAGGACGGAATTCCCGAGTCTAATCTTTCTTCAGCTCCTGATGGACAGATTGTAAAATATCAACCCTTTGTGAATGAAGCAGCAAAGGCAATGCTGAGGCAGATAATGAACATAGATACTTCACGGGTCGGATCTCTTAGCACCAATTCAGATAGTTTCTTGATTGGCAATGGCCTTGTCACAATCGCCAGCTATTGA 915 48.42 MGEEGAISRSAGSQGSAPPPILNANAPPPFLSKTYDMVDDSATDAIVSWSHSNNSFVVWNPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEGFLRGQKHLLKSINRRKPAHGQSQPPQQSQVQNSSPSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDSQLQVMVQRLQGMEQRQQQMMSFLAKAVQSPGFLSQFVQQQNESSRCISEANKKRRLKQDGIPESNLSSAPDGQIVKYQPFVNEAAKAMLRQIMNIDTSRVGSLSTNSDSFLIGNGLVTIASY 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41049002 41060546 - Bma021778.1 Bma05g00705 82789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00705 304 Coils Coil 149 176 - -
Bma05g00705 304 MobiDBLite consensus disorder prediction 1 25 - -
Bma05g00705 304 SUPERFAMILY Winged helix DNA-binding domain 25 119 IPR036390 -
Bma05g00705 304 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma05g00705 304 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma05g00705 304 PRINTS Heat shock factor (HSF) domain signature 30 53 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma05g00705 304 Gene3D - 22 120 IPR036388 -
Bma05g00705 304 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 299 IPR027725 -
Bma05g00705 304 MobiDBLite consensus disorder prediction 120 140 - -
Bma05g00705 304 SMART hsfneu3 26 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma05g00705 304 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 9 299 - -
Bma05g00705 304 ProSitePatterns HSF-type DNA-binding domain signature. 69 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma05g00705 304 MobiDBLite consensus disorder prediction 119 140 - -
Bma05g00705 304 Pfam HSF-type DNA-binding 30 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00705 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101207437 437.187
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00922 Bma-Chr1:8984682 Bma05g00705 Bma-Chr5:41049002 4.30E-85 dispersed
Bma05g00705 Bma-Chr5:41049002 Bma06g00874 Bma-Chr6:43533852 7.07E-63 dispersed
Bma06g00796 Bma-Chr6:40910119 Bma05g00705 Bma-Chr5:41049002 9.55E-52 dispersed
Bma14g00978 Bma-Chr14:11396471 Bma05g00705 Bma-Chr5:41049002 2.27E-56 dispersed
Bma15g00954 Bma-Chr15:36052095 Bma05g00705 Bma-Chr5:41049002 1.56E-10 dispersed
Bma02g01198 Bma-Chr2:54072709 Bma05g00705 Bma-Chr5:41049002 1.40E-75 transposed
Bma04g01599 Bma-Chr4:51898229 Bma05g00705 Bma-Chr5:41049002 1.70E-44 transposed
Bma09g00260 Bma-Chr9:13812729 Bma05g00705 Bma-Chr5:41049002 2.92E-43 transposed
Bma15g00023 Bma-Chr15:271501 Bma05g00705 Bma-Chr5:41049002 2.30E-69 transposed
Bma05g01091 Bma-Chr5:49637458 Bma05g00705 Bma-Chr5:41049002 9.24E-67 transposed
Bma12g00234 Bma-Chr12:3039218 Bma05g00705 Bma-Chr5:41049002 4.14E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g705 Blo02g00985 . Bda06g01262 Bda08g00638 . . . . Cmo06g00645 Cmo16g01225 . . . . Sed10g1395 Cpe14g00974 . Bhi11g00015 Tan08g0173 Cmetu05g1605 . . Mch10g1679 . Cla10g00139 Cam10g0138 Cec10g0148 Cco10g0148 Clacu10g0142 Cmu10g0989 Cre10g0400 . . . . Lsi07g01178 . . Cme06g02455 . . . . . . Bma05g00705 . . . . Cma06g00639 Cma16g01175 Car06g00570 Car16g01108 . . . . . . . . . . . . . . . . . Csa03g00150 Chy06g02159 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g00705 . 12 278 HSF AT4G17750 68.6 1.4e-95 347.1
Bma01g00922 . 27 245 HSF AT4G17750 54.3 1.7e-59 227.3
Bma02g00528 . 39 225 HSF AT4G17750 55.2 4.2e-55 212.6
Bma02g01198 . 9 207 HSF AT4G17750 52.3 8.8e-53 204.9
Bma05g01091 . 36 220 HSF AT4G17750 53.0 2.0e-49 193.7
Bma06g00874 BCT 171 358 HSF AT4G17750 50.5 6.6e-48 188.7
Bma01g02269 . 20 118 HSF AT4G17750 71.7 3.6e-38 156.4
Bma05g00705 . 16 296 HSF AT5G16820 70.2 6.3e-96 348.2
Bma12g00234 . 22 325 HSF AT5G16820 64.4 4.2e-92 335.5
Bma01g00922 . 40 245 HSF AT5G16820 52.6 2.0e-54 210.3
Bma02g01198 . 11 206 HSF AT5G16820 53.1 1.7e-53 207.2
Bma02g00528 . 40 225 HSF AT5G16820 52.9 5.6e-52 202.2
Bma05g01091 . 37 222 HSF AT5G16820 53.6 5.8e-49 192.2
Bma12g00234 . 24 507 HSF AT1G32330 52.2 3.7e-112 402.1
Bma05g00705 . 18 300 HSF AT1G32330 69.7 9.7e-105 377.5
Bma01g00922 . 28 233 HSF AT1G32330 54.0 5.8e-57 218.8
Bma02g01198 . 6 186 HSF AT1G32330 51.8 6.4e-48 188.7
Bma01g02269 . 18 117 HSF AT1G32330 70.0 1.7e-37 154.1
Bma05g00705 . 28 295 HSF AT3G02990 69.5 8.3e-93 337.8
Bma01g00922 . 40 226 HSF AT3G02990 56.0 4.0e-55 212.6
Bma02g01198 . 11 209 HSF AT3G02990 52.6 1.3e-53 207.6
Bma02g00528 . 40 226 HSF AT3G02990 52.4 1.4e-52 204.1
Bma05g01091 . 37 235 HSF AT3G02990 50.2 5.6e-49 192.2
Bma01g02269 . 8 133 HSF AT3G02990 58.9 1.3e-37 154.5
Bma02g00528 . 28 245 HSF AT2G26150 59.8 5.7e-75 278.1
Bma05g00705 . 6 248 HSF AT2G26150 51.8 1.6e-61 233.4
Bma01g01469 BCT 7 392 HSF AT4G18880 50.1 8.4e-94 340.9
Bma02g01198 . 3 480 HSF AT4G13980 53.1 3.3e-126 448.7
Bma01g00922 . 28 222 HSF AT5G43840 50.8 2.2e-48 189.5
Bma01g00922 . 28 254 HSF AT3G22830 56.5 2.1e-68 256.5
Bma05g00705 . 16 237 HSF AT3G22830 58.8 6.3e-65 245.0
Bma02g00528 . 28 232 HSF AT3G22830 54.7 2.5e-61 233.0
Bma12g00234 . 28 236 HSF AT3G22830 54.6 2.8e-57 219.5
Bma06g00874 BCT 160 380 HSF AT3G51910 51.6 2.9e-53 205.7
Bma05g00705 . 22 223 HSF AT3G51910 54.5 1.1e-52 203.8
Bma02g00528 . 28 219 HSF AT3G51910 53.6 1.1e-49 193.7
Bma01g00922 . 28 233 HSF AT3G63350 50.5 1.2e-51 200.3
Bma06g00874 BCT 160 354 HSF AT3G63350 50.8 1.3e-48 190.3
Bma06g00874 BCT 166 372 HSF AT5G54070 52.4 1.5e-51 200.3
Bma01g00243 BCT 158 364 HSF AT5G54070 51.4 3.6e-50 195.7
Bma09g00260 . 2 285 HSF AT4G36990 51.4 1.5e-68 256.5
Bma01g02269 . 16 119 HSF AT4G11660 75.0 6.8e-45 178.3
Bma09g00260 . 2 100 HSF AT4G11660 74.7 5.9e-41 165.2
Bma01g02269 . 1 343 HSF AT1G46264 55.2 6.1e-93 337.8
Bma05g00705 . 27 132 HSF AT1G46264 68.9 2.3e-39 159.8
Bma02g01198 . 1 102 HSF AT1G46264 68.6 1.9e-38 156.8
Bma05g01091 . 36 131 HSF AT1G46264 70.8 8.2e-37 151.4
Bma06g00796 . 6 179 HSF AT3G24520 63.2 8.0e-58 221.1
Bma05g00705 . 12 278 HSF AT4G17750 68.6 1.4e-95 347.1
Bma01g00922 . 27 245 HSF AT4G17750 54.3 1.7e-59 227.3
Bma02g00528 . 39 225 HSF AT4G17750 55.2 4.2e-55 212.6
Bma02g01198 . 9 207 HSF AT4G17750 52.3 8.8e-53 204.9
Bma05g01091 . 36 220 HSF AT4G17750 53.0 2.0e-49 193.7
Bma06g00874 BCT 171 358 HSF AT4G17750 50.5 6.6e-48 188.7
Bma01g02269 . 20 118 HSF AT4G17750 71.7 3.6e-38 156.4
Bma05g00705 . 16 296 HSF AT5G16820 70.2 6.3e-96 348.2
Bma12g00234 . 22 325 HSF AT5G16820 64.4 4.2e-92 335.5
Bma01g00922 . 40 245 HSF AT5G16820 52.6 2.0e-54 210.3
Bma02g01198 . 11 206 HSF AT5G16820 53.1 1.7e-53 207.2
Bma02g00528 . 40 225 HSF AT5G16820 52.9 5.6e-52 202.2
Bma05g01091 . 37 222 HSF AT5G16820 53.6 5.8e-49 192.2
Bma12g00234 . 24 507 HSF AT1G32330 52.2 3.7e-112 402.1
Bma05g00705 . 18 300 HSF AT1G32330 69.7 9.7e-105 377.5
Bma01g00922 . 28 233 HSF AT1G32330 54.0 5.8e-57 218.8
Bma02g01198 . 6 186 HSF AT1G32330 51.8 6.4e-48 188.7
Bma01g02269 . 18 117 HSF AT1G32330 70.0 1.7e-37 154.1
Bma05g00705 . 28 295 HSF AT3G02990 69.5 8.3e-93 337.8
Bma01g00922 . 40 226 HSF AT3G02990 56.0 4.0e-55 212.6
Bma02g01198 . 11 209 HSF AT3G02990 52.6 1.3e-53 207.6
Bma02g00528 . 40 226 HSF AT3G02990 52.4 1.4e-52 204.1
Bma05g01091 . 37 235 HSF AT3G02990 50.2 5.6e-49 192.2
Bma01g02269 . 8 133 HSF AT3G02990 58.9 1.3e-37 154.5
Bma02g00528 . 28 245 HSF AT2G26150 59.8 5.7e-75 278.1
Bma05g00705 . 6 248 HSF AT2G26150 51.8 1.6e-61 233.4
Bma01g01469 BCT 7 392 HSF AT4G18880 50.1 8.4e-94 340.9
Bma02g01198 . 3 480 HSF AT4G13980 53.1 3.3e-126 448.7
Bma01g00922 . 28 222 HSF AT5G43840 50.8 2.2e-48 189.5
Bma01g00922 . 28 254 HSF AT3G22830 56.5 2.1e-68 256.5
Bma05g00705 . 16 237 HSF AT3G22830 58.8 6.3e-65 245.0
Bma02g00528 . 28 232 HSF AT3G22830 54.7 2.5e-61 233.0
Bma12g00234 . 28 236 HSF AT3G22830 54.6 2.8e-57 219.5
Bma06g00874 BCT 160 380 HSF AT3G51910 51.6 2.9e-53 205.7
Bma05g00705 . 22 223 HSF AT3G51910 54.5 1.1e-52 203.8
Bma02g00528 . 28 219 HSF AT3G51910 53.6 1.1e-49 193.7
Bma01g00922 . 28 233 HSF AT3G63350 50.5 1.2e-51 200.3
Bma06g00874 BCT 160 354 HSF AT3G63350 50.8 1.3e-48 190.3
Bma06g00874 BCT 166 372 HSF AT5G54070 52.4 1.5e-51 200.3
Bma01g00243 BCT 158 364 HSF AT5G54070 51.4 3.6e-50 195.7
Bma09g00260 . 2 285 HSF AT4G36990 51.4 1.5e-68 256.5
Bma01g02269 . 16 119 HSF AT4G11660 75.0 6.8e-45 178.3
Bma09g00260 . 2 100 HSF AT4G11660 74.7 5.9e-41 165.2
Bma01g02269 . 1 343 HSF AT1G46264 55.2 6.1e-93 337.8
Bma05g00705 . 27 132 HSF AT1G46264 68.9 2.3e-39 159.8
Bma02g01198 . 1 102 HSF AT1G46264 68.6 1.9e-38 156.8
Bma05g01091 . 36 131 HSF AT1G46264 70.8 8.2e-37 151.4
Bma06g00796 . 6 179 HSF AT3G24520 63.2 8.0e-58 221.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004373 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57321 PF00447 HSF_DNA-bind 3.70E-33 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00705 Bma_Chr05 FPKM 0.915591 0.725214 1.681292 1.449096 4.387772 4.09268 3.403906 1.16737 1.525396 1.421782