Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00711 GAGAGAGTAGCTATGGAAGCTCTTTTCTCCAACGACTTCTTTAACTTCATAATCTACGACACCATCTCTGCAACCCCATATTATCCTCAAGACCCTTCAGACAACGCAAATTTCTTACAAGATACTAATTTTGTACCTCGAGGTCCAAAAGTTTCAACAGAGAGCTGCTCATCAAAGCTCGGAAAAATCGTTCTGAGCCGGCCGGAAAACTCCGACGGCAGCCGATATTTCGGGGGGCGAAGCCAGAAAAAGAGGAGAAGAAAGGCAAGAGTGTTTAAAAATAAAGAGCAGATGGAAACTCAAAGGATGACTCACATCGCTATTGAAAGAAACAGAAGAAAACAAATGAATGAACATCTTGCTGTCTTACGTTCTCTCATGCCTGAATCTTATGCTCAAAGGGGTGATCAAACCTCAATTGTAGGGGGTGCCATAGAGTTTGTGAAGGAGCTTGAGCATCTGTTACAGACCCTTGAAGCCCAAAAGCTGCAACTTGAGCTACAAAAAAGACAAGATCAAAGCCAAATTGAAGAGAAAACTGACAATAAAATGATATTCTCACCTCCCTTCTCACAATTCTTTGTGAACCCACAATTCAATTGGTCTCAAAAGCCTAACAAAACTGTACAAGAATCTACTGCCATGGCTGTAGCTGATGTGGAAGTGACTTTGATTGAAACCCATGCAAATCTCAGAATCCTCTCCAGAAAAAACCCTAAAAATCTCTCCTTTTTGGTTGCCGGTTTCCAAGCTCTCTATTTTACTGTTCTCCATCTCAATGTCACCACCATCAACCCTCTTGTTCTTTACTCCATTAGTGCCAAGGTGGAAGAGGAATGTCAATTGAGGTGTGTTGATGACATTGCAGCTGGAGTTCACCAGATGCTTAGTAGAATAATGGAAGAAGAAGGATATTTATATTGA 924 41.45 ERVAMEALFSNDFFNFIIYDTISATPYYPQDPSDNANFLQDTNFVPRGPKVSTESCSSKLGKIVLSRPENSDGSRYFGGRSQKKRRRKARVFKNKEQMETQRMTHIAIERNRRKQMNEHLAVLRSLMPESYAQRGDQTSIVGGAIEFVKELEHLLQTLEAQKLQLELQKRQDQSQIEEKTDNKMIFSPPFSQFFVNPQFNWSQKPNKTVQESTAMAVADVEVTLIETHANLRILSRKNPKNLSFLVAGFQALYFTVLHLNVTTINPLVLYSISAKVEEECQLRCVDDIAAGVHQMLSRIMEEEGYLY 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41189577 41191416 + Bma021786.1 Bma05g00711 82795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00711 307 PANTHER MAX DIMERIZATION, MAD 4 303 - -
Bma05g00711 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 171 IPR036638 GO:0046983
Bma05g00711 307 Coils Coil 148 182 - -
Bma05g00711 307 PANTHER TRANSCRIPTION FACTOR BHLH71 4 303 - -
Bma05g00711 307 Pfam Helix-loop-helix DNA-binding domain 101 152 IPR011598 GO:0046983
Bma05g00711 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 151 IPR011598 GO:0046983
Bma05g00711 307 Gene3D - 91 182 IPR036638 GO:0046983
Bma05g00711 307 SMART finulus 106 157 IPR011598 GO:0046983
Bma05g00711 307 CDD bHLH_AtFAMA_like 103 162 - -
Bma05g00711 307 MobiDBLite consensus disorder prediction 67 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00711 Bma-Chr5:41189577 Bma14g01286 Bma-Chr14:23293160 4.03E-67 dispersed
Bma05g00711 Bma-Chr5:41189577 Bma08g00377 Bma-Chr8:8479415 2.52E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57323 PF00010 HLH 2.10E-10 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00711 - - pvu:PHAVU_003G284500g 326.25