Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma05g00711 | GAGAGAGTAGCTATGGAAGCTCTTTTCTCCAACGACTTCTTTAACTTCATAATCTACGACACCATCTCTGCAACCCCATATTATCCTCAAGACCCTTCAGACAACGCAAATTTCTTACAAGATACTAATTTTGTACCTCGAGGTCCAAAAGTTTCAACAGAGAGCTGCTCATCAAAGCTCGGAAAAATCGTTCTGAGCCGGCCGGAAAACTCCGACGGCAGCCGATATTTCGGGGGGCGAAGCCAGAAAAAGAGGAGAAGAAAGGCAAGAGTGTTTAAAAATAAAGAGCAGATGGAAACTCAAAGGATGACTCACATCGCTATTGAAAGAAACAGAAGAAAACAAATGAATGAACATCTTGCTGTCTTACGTTCTCTCATGCCTGAATCTTATGCTCAAAGGGGTGATCAAACCTCAATTGTAGGGGGTGCCATAGAGTTTGTGAAGGAGCTTGAGCATCTGTTACAGACCCTTGAAGCCCAAAAGCTGCAACTTGAGCTACAAAAAAGACAAGATCAAAGCCAAATTGAAGAGAAAACTGACAATAAAATGATATTCTCACCTCCCTTCTCACAATTCTTTGTGAACCCACAATTCAATTGGTCTCAAAAGCCTAACAAAACTGTACAAGAATCTACTGCCATGGCTGTAGCTGATGTGGAAGTGACTTTGATTGAAACCCATGCAAATCTCAGAATCCTCTCCAGAAAAAACCCTAAAAATCTCTCCTTTTTGGTTGCCGGTTTCCAAGCTCTCTATTTTACTGTTCTCCATCTCAATGTCACCACCATCAACCCTCTTGTTCTTTACTCCATTAGTGCCAAGGTGGAAGAGGAATGTCAATTGAGGTGTGTTGATGACATTGCAGCTGGAGTTCACCAGATGCTTAGTAGAATAATGGAAGAAGAAGGATATTTATATTGA | 924 | 41.45 | ERVAMEALFSNDFFNFIIYDTISATPYYPQDPSDNANFLQDTNFVPRGPKVSTESCSSKLGKIVLSRPENSDGSRYFGGRSQKKRRRKARVFKNKEQMETQRMTHIAIERNRRKQMNEHLAVLRSLMPESYAQRGDQTSIVGGAIEFVKELEHLLQTLEAQKLQLELQKRQDQSQIEEKTDNKMIFSPPFSQFFVNPQFNWSQKPNKTVQESTAMAVADVEVTLIETHANLRILSRKNPKNLSFLVAGFQALYFTVLHLNVTTINPLVLYSISAKVEEECQLRCVDDIAAGVHQMLSRIMEEEGYLY | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 41189577 | 41191416 | + | Bma021786.1 | Bma05g00711 | 82795 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma05g00711 | 307 | PANTHER | MAX DIMERIZATION, MAD | 4 | 303 | - | - | |
Bma05g00711 | 307 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 100 | 171 | IPR036638 | GO:0046983 | |
Bma05g00711 | 307 | Coils | Coil | 148 | 182 | - | - | |
Bma05g00711 | 307 | PANTHER | TRANSCRIPTION FACTOR BHLH71 | 4 | 303 | - | - | |
Bma05g00711 | 307 | Pfam | Helix-loop-helix DNA-binding domain | 101 | 152 | IPR011598 | GO:0046983 | |
Bma05g00711 | 307 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 100 | 151 | IPR011598 | GO:0046983 | |
Bma05g00711 | 307 | Gene3D | - | 91 | 182 | IPR036638 | GO:0046983 | |
Bma05g00711 | 307 | SMART | finulus | 106 | 157 | IPR011598 | GO:0046983 | |
Bma05g00711 | 307 | CDD | bHLH_AtFAMA_like | 103 | 162 | - | - | |
Bma05g00711 | 307 | MobiDBLite | consensus disorder prediction | 67 | 88 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma05g00711 | Bma-Chr5:41189577 | Bma14g01286 | Bma-Chr14:23293160 | 4.03E-67 | dispersed | |
Bma05g00711 | Bma-Chr5:41189577 | Bma08g00377 | Bma-Chr8:8479415 | 2.52E-27 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57323 | PF00010 | HLH | 2.10E-10 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma05g00711 | - | - | pvu:PHAVU_003G284500g | 326.25 |