Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00715 ATGCGGAACCCTAACGAGCTCTGTCTCGAGGACGATGACTCGTGGGAAGTTCGAGCTTTTGCAGAAGACACCAGGAATATCATGGCTACCACTTGGCCACCAAGGTCCTACACTTGCACCTTCTGCAGAAGAGAGTTTCGGTCTGCTCAAGCCCTAGGCGGCCACATGAACGTCCACCGCCAGGACAGAGCACGCCTCCACCTAGCGCCGTCGCCAAGATCAGTTGAAACCTCTTCGTCTTCAACCTCGCAAGTCGTAATTCCATCCCCTGGATTTCTATCCAACGGTCATGGTTTACGCTTCTTATACCAATTATCAAACCCTAATTGCAGATTCCGCTCGACTCCTTCTACTTTGCTCTCCATGTCTCCTTGTCAACCGGACAACCCTGCATTCTCATTCTCCCCGTCGACAAATTTTCAGACAAAGATTCCCCAAATCTGCTCAACCAACCTCGGGCTTATCAAACCTTACGAGCCCTTGGTCGGTAAGTTTTCCGGCGGCAAGGAAGAGCTTGATCTAGAGCTCCGTCTTGGACAAAGACCAACACCATCTTAA 558 50.9 MRNPNELCLEDDDSWEVRAFAEDTRNIMATTWPPRSYTCTFCRREFRSAQALGGHMNVHRQDRARLHLAPSPRSVETSSSSTSQVVIPSPGFLSNGHGLRFLYQLSNPNCRFRSTPSTLLSMSPCQPDNPAFSFSPSTNFQTKIPQICSTNLGLIKPYEPLVGKFSGGKEELDLELRLGQRPTPS 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41370129 41370686 + Bma021791.1 Bma05g00715 82799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00715 185 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Bma05g00715 185 PANTHER OS07G0101800 PROTEIN 10 181 - -
Bma05g00715 185 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Bma05g00715 185 Gene3D Classic Zinc Finger 29 86 - -
Bma05g00715 185 SUPERFAMILY beta-beta-alpha zinc fingers 34 64 IPR036236 -
Bma05g00715 185 PANTHER OS07G0101800 PROTEIN 10 181 - -
Bma05g00715 185 SMART c2h2final6 37 59 IPR013087 -
Bma05g00715 185 Pfam C2H2-type zinc finger 37 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00715 - - - jre:108984087 183.726
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00715 Bma07g00945 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00715 Bma-Chr5:41370129 Bma07g00945 Bma-Chr7:35697695 2.42E-39 dispersed
Bma05g00715 Bma-Chr5:41370129 Bma05g00719 Bma-Chr5:41508238 5.42E-138 proximal
Bma12g00204 Bma-Chr12:2725472 Bma05g00715 Bma-Chr5:41370129 3.68E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g661 . . . Bda08g00626 Bpe05g00532 . Bma07g00945 . Cmo06g00876 . Cma02g01606 . Car02g01366 . . . Cpe05g00184 . . . . . . . Cla10g00172 Cam10g0171 Cec10g0180 Cco10g0180 Clacu10g0175 Cmu10g1023 Cre10g0429 . . . . . . . Cme06g02480 . . . Bda09g00708 Bpe08g00846 . Bma05g00715 . . Cmo02g01650 . Cma06g00849 . . . . . . . . . . . . . . . . . . . . Csa03g04620 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007423 2 1 1 5 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57325 PF13912 zf-C2H2_6 3.30E-06 CL0361 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00715 Bma_Chr05 FPKM 16.707605 19.240421 24.722631 26.819706 33.001381 29.594547 32.110188 28.472069 26.653017 33.666737