Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00717 ATGTGTTTCGATTGCAATGCTAAGAATCCGACTTGGGCGTCTGTTACGTATGGGATCTTTCTGTGCATCGATTGCTCTGCCGTGCATCGAAGCCTCGGTGTGCATATCAGTTTCGTCAGATCGACAGACTTAGACTCGTGGACCACTGAGCAACTTAGAATGATGAGCTTTGGGGGTAATAATCGTGCACATGTTTTCTTTAAACAACATGGATGGACCGATGGAGGAAAAATTGAGGCTAAATATACGTCGAGAGCAGCTGATTTGTATAGACAAATGCTTACGAAAGAAGTTGCTAAAACTATACCAAAAGAGGATGGCTTGCCATCATCTCCGGTTGCTTCTCAGCCAACTCAAGCAACAAATGGGATTCTTGATGTGAAAACAAGGGAGACTACGAAAGATAACTCCTCAGAAAAGCAAGAAGCTCCTGTTATCTCAGCTTCGCCAAAACCTTCTTACACAGTTAGTACGAGTACTGTGAAGAAGCCTCTTGGTGCAAAGAAGATTGGGAAGACTGGGGGGCTTGGTGCACGAAAGCTTACTTCAAAGCCAAGTGAAAATGTTTATGATCAGAAGCCTGAAGAGCCAGTTATTCCAGTTGCTTCTGCTACCAATGTTGCTCCGACATTTGGCTCATCTTTTGCCTCTCGTTTTGATTATGTTGAAAATGTCCAATCTTCAGAGTCAAATTCTACCAGCTCTCATATTGAAGAGACTGATGAAGCGAGGAAGAAGTTTTCCAATGCTAAATCTATTTCATCTGCTCAATATTTCGGGGACCAGAATAAAGCAGCTGAAAGAGAATCTCAAATTACCTTGCAGAAGTTCTCAGGTTCCAATGCCATTTCTAGTGCTGATCTTTTTGGTCATGGAGCGGATAATTCCTCTATTGATATTACTGCTGGTGACCTTATTAACCGCCTCTCTTTCCAGGCTCAACAAGATATCTCATCCCTCAAGAACATTGCCGGTGAGACTGGAAAAAAGCTCAGCTCCATTGCTTCTACTCTAATTACTGATCTCCAGGACAGAATCCTTTGA 1044 42.82 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTDLDSWTTEQLRMMSFGGNNRAHVFFKQHGWTDGGKIEAKYTSRAADLYRQMLTKEVAKTIPKEDGLPSSPVASQPTQATNGILDVKTRETTKDNSSEKQEAPVISASPKPSYTVSTSTVKKPLGAKKIGKTGGLGARKLTSKPSENVYDQKPEEPVIPVASATNVAPTFGSSFASRFDYVENVQSSESNSTSSHIEETDEARKKFSNAKSISSAQYFGDQNKAAERESQITLQKFSGSNAISSADLFGHGADNSSIDITAGDLINRLSFQAQQDISSLKNIAGETGKKLSSIASTLITDLQDRIL 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41456862 41461971 - Bma021795.1 Bma05g00717 82801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00717 347 SMART arf_gap_3 2 103 IPR001164 GO:0005096
Bma05g00717 347 SUPERFAMILY ArfGap/RecO-like zinc finger 1 100 IPR037278 -
Bma05g00717 347 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 233 - -
Bma05g00717 347 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 233 - -
Bma05g00717 347 MobiDBLite consensus disorder prediction 139 162 - -
Bma05g00717 347 Gene3D Arf GTPase activating protein 1 111 IPR038508 -
Bma05g00717 347 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 228 347 - -
Bma05g00717 347 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 228 347 - -
Bma05g00717 347 MobiDBLite consensus disorder prediction 103 195 - -
Bma05g00717 347 Pfam Putative GTPase activating protein for Arf 1 91 IPR001164 GO:0005096
Bma05g00717 347 MobiDBLite consensus disorder prediction 111 127 - -
Bma05g00717 347 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 106 IPR001164 GO:0005096
Bma05g00717 347 MobiDBLite consensus disorder prediction 227 248 - -
Bma05g00717 347 PRINTS HIV Rev interacting protein signature 39 60 IPR001164 GO:0005096
Bma05g00717 347 PRINTS HIV Rev interacting protein signature 18 35 IPR001164 GO:0005096
Bma05g00717 347 CDD ArfGap_ArfGap2_3_like 1 100 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00717 K12493 ARFGAP2_3; ADP-ribosylation factor GTPase-activating protein 2/3 K11855 tcc:18606037 520.005
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00717 Bma-Chr5:41456862 Bma12g00211 Bma-Chr12:2766955 0 dispersed
Bma05g00713 Bma-Chr5:41285890 Bma05g00717 Bma-Chr5:41456862 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0438 . . . . Chy04g00050 . . . . . . . Bma05g00717 . . . Cmo19g00502 . . . . . . Bhi05g00520 . . . . . . Cla09g01176 Cam09g1241 Cec09g1257 Cco09g1287 . . Cre09g1205 . Csa03g04650 . Cme04g00064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001954 2 2 2 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 3 2 1 2 4 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00717 Bma_Chr05 FPKM 58.97406 66.149857 71.081436 76.078239 44.496181 48.763775 48.229439 143.034561 146.09436 132.044357