Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00742 ATGTTTGAACAGAGTGGTTCCGATTTGGTGCTTCTTGACTCCATTCGCAGGTATTTGTTGGGCGAATCGGACCCTCTGCGAGACGGTAAAGTGATTGTTGCCGGTTCCGGCACTGTTTTCTGTAGGAACTCCAGTTTTAGTAGCTTGTATCCTTGCCTGACGGAGAATTGGGGGGAGTTGCCGCTTAAAGTGGATGATTCGGAGGATATGTTCCTCGCCGGAGTGCTCCATGAAGCCATTAATGTCGGTTGGGTACCCTCACTTACTTCGTCTTCTCCGGAAATGGGAAATTTTGGAGTGTCTTATGTGAAATCGGAGCCGGAGATCTTTCCTCCACTGAACCAGTCACCGGAGCTGGAGAAGGTACAGCCGGTACGGGCAGATGTTCCTCCTAGAGGAAAGCATTACCGGGGCGTTCGGCAGCGGCCGTGGGGTAAATTCGCGGCGGAAATTCGGGACCCGGCGAAGAATGGGGCTAGAGTTTGGCTTGGAACCTTTGAGACGGCCGAGGACGCGGCTTTAGCTTACGACCGCGCGGCGTATCGGATGCGCGGCTCAAAAGCTTTACTCAACTTTCCTCTCCGTGTTAACTCCGGTGAACCCGACCCGATTAGAGTCACTTCCAAGCGTTCTTCGCCGGAGCCATCATCGCCCGGAGTTAGCGGGGCGTCGCCTAAAAGGCGGAAGAAGGCGAACGTCTTGTCGGATTCGCCAATATCGCCTCCTCAAGAGGGGCAAATAAGTAAAACACCTATGGGGGAGCAAATACGTACGGTAAACCATATAAAGGCTTGTACACCTGGCGAATAA 810 53.21 MFEQSGSDLVLLDSIRRYLLGESDPLRDGKVIVAGSGTVFCRNSSFSSLYPCLTENWGELPLKVDDSEDMFLAGVLHEAINVGWVPSLTSSSPEMGNFGVSYVKSEPEIFPPLNQSPELEKVQPVRADVPPRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPIRVTSKRSSPEPSSPGVSGASPKRRKKANVLSDSPISPPQEGQISKTPMGEQIRTVNHIKACTPGE 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43756219 43757028 - Bma021839.1 Bma05g00742 82826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00742 269 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 34 230 - -
Bma05g00742 269 CDD AP2 134 193 IPR001471 GO:0003700|GO:0006355
Bma05g00742 269 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Bma05g00742 269 PRINTS Ethylene responsive element binding protein signature 159 175 IPR001471 GO:0003700|GO:0006355
Bma05g00742 269 MobiDBLite consensus disorder prediction 236 255 - -
Bma05g00742 269 MobiDBLite consensus disorder prediction 196 269 - -
Bma05g00742 269 PANTHER DNA-BINDING DOMAIN 34 230 IPR044808 GO:0003700|GO:0009873
Bma05g00742 269 Gene3D AP2/ERF domain 134 196 IPR036955 GO:0003700|GO:0006355
Bma05g00742 269 Pfam AP2 domain 135 185 IPR001471 GO:0003700|GO:0006355
Bma05g00742 269 ProSiteProfiles AP2/ERF domain profile. 135 193 IPR001471 GO:0003700|GO:0006355
Bma05g00742 269 SUPERFAMILY DNA-binding domain 135 195 IPR016177 GO:0003677
Bma05g00742 269 SMART rav1_2 135 199 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00742 Bma-Chr5:43756219 Bma12g00674 Bma-Chr12:27964462 2.17E-106 dispersed
Bma05g00742 Bma-Chr5:43756219 Bma05g00743 Bma-Chr5:43776381 9.60E-29 tandem
Bma05g01215 Bma-Chr5:51556530 Bma05g00742 Bma-Chr5:43756219 6.80E-33 transposed
Bma10g01124 Bma-Chr10:36177966 Bma05g00742 Bma-Chr5:43756219 1.33E-50 transposed
Bma12g00658 Bma-Chr12:27790718 Bma05g00742 Bma-Chr5:43756219 2.40E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57329 PF00847 AP2 1.10E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00742 K09286 - csv:101203663 308.145