Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00746 ATGAAGATGAGAGCTGAAAACGAAAATGATCATCTGGGTTTGAGTTTGAGCTTGTCGTTTCCTCTGAATCCTCGCTTCGGAGCTTGTTCTTCTTCTTCTCCTTCGGGTTTTTGTTCTGATTTTCAGAAACCCTTTTGGAGCGATACTAGCTCTCCTTCTTCCGACCGGAATAATTGTGATACGTCCCGAGCGGAGAACCGATCGTTTCTCCGAGGTATTGACGTGAACCAGCTGCCGTCGTCGGGGGACTGCGAGGAGGAAGCCGGTGTATCGAGCCCCAACAGCACGGTGTCGAGCATTAGCGGAAAGAGAAGTGAGAGAGAACCAAATGGAGAAGAGCTCGACCTAGATCGAACTTGTTCTCGAGGAAATAGTGATGAAGAAGACGGCGAAACATCGAGGAAGAAGCTGAGGCTCTCCAAAGACCAGTCCGCCATTTTAGAAGAGAGCTTCAAAGAACACAACACTCTTAACCCAAAGCAGAAGCTGGCGTTGGCCAAACAGTTGGGTCTCCGGGCGAGACAAGTGGAAGTCTGGTTTCAGAACAGAAGGGCAAGAACGAAGCTAAAGCAGACGGAGGTTGATTGCGAGTTTTTGAAAAGATGTTGCGACAATCTGACGGAGGAGAACAGGCGGTTGCAAAAAGAAGTACAGGAGCTTAGAGCACTGAAACTTTCCCCGCAACTCTACATGCAAATGACCCCACCCACCACCCTCACCATGTGTCCCTCGTGCGAGCGTGTGGGGGTCCCGCCCACGTCCTCCTCCGCCCGGGCCCACCCTCGCCACATCCACGTCAGCCCGTGGGCTGTTTCCGGCCCAATAGCCCACCCCAGAATCCACCCGAAATCATAA 855 52.28 MKMRAENENDHLGLSLSLSFPLNPRFGACSSSSPSGFCSDFQKPFWSDTSSPSSDRNNCDTSRAENRSFLRGIDVNQLPSSGDCEEEAGVSSPNSTVSSISGKRSEREPNGEELDLDRTCSRGNSDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCDNLTEENRRLQKEVQELRALKLSPQLYMQMTPPTTLTMCPSCERVGVPPTSSSARAHPRHIHVSPWAVSGPIAHPRIHPKS 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43873071 43874321 + Bma021844.1 Bma05g00746 82830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00746 284 SMART HOX_1 132 194 IPR001356 GO:0003677
Bma05g00746 284 Coils Coil 189 226 - -
Bma05g00746 284 CDD homeodomain 134 191 IPR001356 GO:0003677
Bma05g00746 284 Gene3D - 138 188 - -
Bma05g00746 284 SUPERFAMILY Homeodomain-like 123 191 IPR009057 -
Bma05g00746 284 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Bma05g00746 284 MobiDBLite consensus disorder prediction 44 63 - -
Bma05g00746 284 PANTHER - 9 268 - -
Bma05g00746 284 MobiDBLite consensus disorder prediction 70 137 - -
Bma05g00746 284 MobiDBLite consensus disorder prediction 105 137 - -
Bma05g00746 284 PRINTS Lambda-repressor HTH signature 161 170 IPR000047 GO:0003677
Bma05g00746 284 PRINTS Lambda-repressor HTH signature 170 186 IPR000047 GO:0003677
Bma05g00746 284 SMART halz 190 233 IPR003106 GO:0006355|GO:0043565
Bma05g00746 284 Pfam Homeodomain 134 188 IPR001356 GO:0003677
Bma05g00746 284 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 9 268 - -
Bma05g00746 284 Pfam HD-ZIP protein N terminus 8 108 IPR006712 GO:0005634
Bma05g00746 284 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355|GO:0043565
Bma05g00746 284 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Bma05g00746 284 MobiDBLite consensus disorder prediction 87 104 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00746 Bma-Chr5:43873071 Bma10g00168 Bma-Chr10:1446294 7.19E-70 dispersed
Bma12g00657 Bma-Chr12:27787469 Bma05g00746 Bma-Chr5:43873071 3.51E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57331 PF04618 HD-ZIP_N 6.30E-24 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00746 K09338 - jre:109005254 392.504