Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00749 TCTCCATCTCGCATGGACTTCGTTGAACCTCTCTCTAATTCTTCTTCCTCCTCTTCCTCAGACAAAATCTCAGAGCCCAAAGATGGTGACCAGGTTAAGGAAAAGCTTAATTCTACCAATCGTAGAAAGCATCCAGTTTATCGCGGAGTGAGAATGCGTCAGTGGGGAAAATGGGTATCCGAAATCAGGGAACCGAGGAAGAAATCTAGAATTTGGCTCGGAAGTTACTCCTCGCCGGACATGGCAGCTCGAGCTCATGATGTCGCAGCGAGAGCAATTAAAGGTCGCTCGGCTTACCTCAACTTCCCCGAGCTAGCTCACCGGCTTCCGACTCCGGCGACCTCGTCACCGAAGGATATTCAAGCCGCTGCGGCGAAAGCAGCCTTTCTTCTCTGCGAAGAGGCGGAGCTCCGGCGAAGGGAGCTTGACGTTTCAACAATGGCGTCTTCTGATGAAACCCGAGAGGAATCTTCTGCCGCTTGTTCGTCTCTGAGAGAGAAAGACGACGCCGTTTTCGACCTCCCTGATCTCTTCCTTGAACAGAAGAGTGAAGCGTCTGTAAAGTTGACCCATTGGTCGCCGTCGCATTTGCATGGAGCTAAAGGCCTATGGGAATATTGTTGA 624 51.28 SPSRMDFVEPLSNSSSSSSSDKISEPKDGDQVKEKLNSTNRRKHPVYRGVRMRQWGKWVSEIREPRKKSRIWLGSYSSPDMAARAHDVAARAIKGRSAYLNFPELAHRLPTPATSSPKDIQAAAAKAAFLLCEEAELRRRELDVSTMASSDETREESSAACSSLREKDDAVFDLPDLFLEQKSEASVKLTHWSPSHLHGAKGLWEYC 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43958112 43958735 + Bma021848.1 Bma05g00749 82833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00749 207 MobiDBLite consensus disorder prediction 23 41 - -
Bma05g00749 207 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Bma05g00749 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 186 - -
Bma05g00749 207 MobiDBLite consensus disorder prediction 1 45 - -
Bma05g00749 207 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Bma05g00749 207 MobiDBLite consensus disorder prediction 143 162 - -
Bma05g00749 207 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Bma05g00749 207 MobiDBLite consensus disorder prediction 1 22 - -
Bma05g00749 207 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Bma05g00749 207 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Bma05g00749 207 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Bma05g00749 207 PRINTS Ethylene responsive element binding protein signature 85 105 IPR001471 GO:0003700|GO:0006355
Bma05g00749 207 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Bma05g00749 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 15 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02441 Bma-Chr1:82036124 Bma05g00749 Bma-Chr5:43958112 1.02E-34 dispersed
Bma04g00955 Bma-Chr4:14515727 Bma05g00749 Bma-Chr5:43958112 2.28E-44 dispersed
Bma05g00749 Bma-Chr5:43958112 Bma15g00586 Bma-Chr15:7347116 2.93E-87 dispersed
Bma09g00267 Bma-Chr9:14634594 Bma05g00749 Bma-Chr5:43958112 4.03E-28 dispersed
Bma05g00749 Bma-Chr5:43958112 Bma05g01217 Bma-Chr5:51580210 4.71E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57333 PF00847 AP2 1.70E-11 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00749 - - twl:119984691 176.022