Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00764 ATGAAGGAAGAAGACGGAACGGGACCACCGAATAGAGAGTTGTACGCGCTGCTTCACATATCGCCGGAAGCCTCCGATGAAGAAATTCGAAAAGCTTATCGCCAGTGGGCACAAGTCTATCACCCCGATAAATACCAAGCACCGCATGTATTTACTCGGTTCAACTCGGAATCTCTCTTCGACTATATTGCTACTGAGAACTTTCAAAGGATATGTGAAGCATATGAAATCTTATCTGATGAGACTAAAAGGCAATTGTATGACATTTACGGCATGGAAGGGTTGACTTCTGGTTTGGAACTTGGTTCAAAGTTAAATAAAGCAGAGGAGATAAAGGAAGAACTCGAAAAGTTACGGCGAAGAAAGGAACAAGATAAAATTTCTGCTCATTTTCGTCCTTCTGGTACAATACTAGCAAATATATCATTGCCACACTTTCTTGAGGGTGACGGCATCATGAGAGGAATGGCCATGACAAGTGAAGTTCAGTCCCAGATATCAAAAGGCAATGTTGTTGCAATTGGAGGAAATTTGGCAGTTACTGGGAATGCTGGCGGTGGAGCTGCTACTGCTGCATTTCGGCATCAATTGTCTTCAGTTTCTTCAATAGAGTTTATGGCTTCCGCTGGTTTACGGTCGCTTATTGGGGTGCAAACATCTCGTAACCTTTCATTACACTCAACAGCAACAATGGGCATTGCAATGTCTTTGAAGGATGGATCATTGAATCTCTCCAACTCTTGGACTCGACAACTGTCTGAAACAGCTAATGGAAATATACAGCTTACTGTAGGTCCAGAGTCATCTATTGCTGTCGGATGGCAGAAGAAAGAAGAGAAGATGTCTGCCTCGGGAGAGCTGAAGTTTAGCACAAGTTCTTTTGGTGCCTCAGCTCATTATACTCACCGCTTCTCCTCAAAGTCCCATGGTCGCATTTCTGGCAGACTTGGAAGCTCTGCCCTTGAGCTTGAAGTTGGTGGCGGGAGGAAATTATCTAGATTTAGTTCCATTCGTATGTTGTATTCAATAGGGATTCAGGGCATTTTTTGGAAGTTTGAGTTGCACCGAGCGGGACAAAAGCTGGTTGTTCCTGTTTTACTTTCCAGGCATTTGAACCCTGTGTTTGCTACTGGAGCATTTATACTTCCAACTTCAATGTATTTTTTAGTCAAGAAATTTGTAGTCAAACCTTATTACCTTCGAAGAGAAAAGCAAAAAACCTTAGAGAATGAGGAAAAAACTTCTTCTCAGGTAGTTCGAGAGGCAAGGGCGGCAGCAGAAAAAGCTCAGCAGCTACTACAGAATGTTGCCAACAGAAAAAGGAATAAACAATTAGAAATAGGAGGTCTTGTAATTACTAAAGCAGTTTATGGGAATCTTAAAGCATTGAAGAAGAAGAATGATTCGAGAGAAATACACGACGAATCATGTTCAAAAATCGTTGATGTGACGATACCTCTAAATTTTCTCGTTAATGATTCCAGCCATCTAAAGCTCCATGAAGGCGTAAAAAAGTCGGGTATCATGGGGTTTTGCGATCCTAGCCCCGGAGAACCCAAGCAATTGAAAATCGAGTATACTTACGGTGGCCATAAATTTGAGGTATTACTC 1611 42.09 MKEEDGTGPPNRELYALLHISPEASDEEIRKAYRQWAQVYHPDKYQAPHVFTRFNSESLFDYIATENFQRICEAYEILSDETKRQLYDIYGMEGLTSGLELGSKLNKAEEIKEELEKLRRRKEQDKISAHFRPSGTILANISLPHFLEGDGIMRGMAMTSEVQSQISKGNVVAIGGNLAVTGNAGGGAATAAFRHQLSSVSSIEFMASAGLRSLIGVQTSRNLSLHSTATMGIAMSLKDGSLNLSNSWTRQLSETANGNIQLTVGPESSIAVGWQKKEEKMSASGELKFSTSSFGASAHYTHRFSSKSHGRISGRLGSSALELEVGGGRKLSRFSSIRMLYSIGIQGIFWKFELHRAGQKLVVPVLLSRHLNPVFATGAFILPTSMYFLVKKFVVKPYYLRREKQKTLENEEKTSSQVVREARAAAEKAQQLLQNVANRKRNKQLEIGGLVITKAVYGNLKALKKKNDSREIHDESCSKIVDVTIPLNFLVNDSSHLKLHEGVKKSGIMGFCDPSPGEPKQLKIEYTYGGHKFEVLL 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44344739 44352023 + Bma031204 Bma05g00764 82848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00764 537 SMART dnaj_3 12 83 IPR001623 -
Bma05g00764 537 Pfam DnaJ-like protein C11, C-terminal 401 535 IPR024586 -
Bma05g00764 537 CDD DnaJ 13 80 IPR001623 -
Bma05g00764 537 Coils Coil 101 128 - -
Bma05g00764 537 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Bma05g00764 537 Gene3D DnaJ domain 11 99 IPR036869 -
Bma05g00764 537 Pfam DnaJ domain 14 88 IPR001623 -
Bma05g00764 537 ProSiteProfiles dnaJ domain profile. 13 91 IPR001623 -
Bma05g00764 537 PANTHER CHAPERONE PROTEIN DNAJ 13 3 536 IPR042162 -
Bma05g00764 537 Coils Coil 419 446 - -
Bma05g00764 537 SUPERFAMILY Chaperone J-domain 11 99 IPR036869 -
Bma05g00764 537 PRINTS DnaJ domain signature 63 83 IPR001623 -
Bma05g00764 537 PRINTS DnaJ domain signature 15 33 IPR001623 -
Bma05g00764 537 PRINTS DnaJ domain signature 33 48 IPR001623 -
Bma05g00764 537 PRINTS DnaJ domain signature 83 102 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00764 K09531 DNAJC11; DnaJ homolog subfamily C member 11 - csv:101219828 814.298
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00764 Bma-Chr5:44344739 Bma10g00819 Bma-Chr10:13997174 1.85E-12 dispersed
Bma05g00764 Bma-Chr5:44344739 Bma03g00809 Bma-Chr3:7524579 3.66E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g538 Blo02g01041 . . Bda08g00579 Bpe05g00578 . . . Cmo06g00801 Cmo16g01191 . . . . Sed04g1713 Cpe14g00943 . Bhi11g00191 Tan01g2031 Cmetu06g0830 . . Mch10g1566 . Cla10g00256 Cam10g0262 Cec10g0270 Cco10g0268 Clacu10g0264 Cmu10g1107 Cre10g0515 Cone8ag0398 Cone12ag0383 . . Lsi07g01301 . . Cme06g02570 . . . . . . Bma05g00764 . . . . Cma06g00781 Cma16g01139 Car06g00695 Car16g01074 Cpe08g00742 . . . . . . . . . . . . . . . . Csa03g00274 Chy06g02048 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007265 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00764 Bma_Chr05 FPKM 15.029166 24.364815 9.492207 13.804584 17.624689 13.143324 18.673342 9.157826 6.233431 5.384295