Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00788 ATGGATGCCCATTCGCTCCCACCTCCTTTTCCTAACATAGATTTCCATCTTCTCCAACAGCAACGCGAATTTCTTCACCACCAGCAACAGCAAAATTCAGATCACGACGACCAAAGCGGAAGTAACGGACTGAACCGGATCAAGAAACGAGATCGAGACGAAAACAGTGATGACGGTGGAGACGGCAGCAAAGACCTCGCCGGAGAAGGATCAGAAATCTCTAGACGACCTCGAGGAAGACCTTCCGGATCTAAAAACAAACCCAAACCTCCGATCATCATTTCTAAGGACAGCGCTAACGCTCTACGCACCCATGTTATAGAAGTCACAGACGGATGTGATATCATCGAGAGAGTTTCCACCTTCGCTCGCCGGAGACATTTAGGCGTCTGCATAATGAGCGGCGCTGGAACGGTGACAAACGTGACTCTCCGACAGCCGGCTTCGACAGGTGCAGTCGTCTCTTTACCTGGTCGGTTCGAGATCTTATCTCTATCCGGCTCGTTTCTGCCACCTCCTGCGCCTCCAGCAGCCACAGGTTTGACCATATACTTGGCCGGAGGGCAAGGTCAGGTGGTCGGAGGAAGTGTCGTCGGGACACTGTTTGCTTCAGGTCCGGTGGTGATTATGGCTGCTTCTTTTAGTAACGCTGCATATGAGAGGCTTCCTCTTGAAGACGATGAAGTCCCTCCATTGCCAATCCAAGGAAGCTCAACTGGATCTCCAGGTGCAGTCAATCAGCAACCTCAAACTCAACCATTAATGGCGGATGGGAATCAGCCGCATTTATTCCATGGTTTGCCTCCGAATCTTCTACACTCGATTCAATTACCAGCTGAAGCTTACTACGCAACAGGTCGACCTCCTTTCTAA 873 50.74 MDAHSLPPPFPNIDFHLLQQQREFLHHQQQQNSDHDDQSGSNGLNRIKKRDRDENSDDGGDGSKDLAGEGSEISRRPRGRPSGSKNKPKPPIIISKDSANALRTHVIEVTDGCDIIERVSTFARRRHLGVCIMSGAGTVTNVTLRQPASTGAVVSLPGRFEILSLSGSFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGTLFASGPVVIMAASFSNAAYERLPLEDDEVPPLPIQGSSTGSPGAVNQQPQTQPLMADGNQPHLFHGLPPNLLHSIQLPAEAYYATGRPPF 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44846922 44847794 + Bma021889.1 Bma05g00788 82872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00788 290 MobiDBLite consensus disorder prediction 234 257 - -
Bma05g00788 290 ProSiteProfiles PPC domain profile profile. 99 235 IPR005175 -
Bma05g00788 290 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 3 290 - -
Bma05g00788 290 SUPERFAMILY AF0104/ALDC/Ptd012-like 99 234 - -
Bma05g00788 290 PIRSF ESCAROLA 15 289 IPR014476 GO:0003680
Bma05g00788 290 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 290 IPR014476 GO:0003680
Bma05g00788 290 CDD DUF296 103 214 IPR005175 -
Bma05g00788 290 Gene3D - 102 237 - -
Bma05g00788 290 MobiDBLite consensus disorder prediction 1 97 - -
Bma05g00788 290 MobiDBLite consensus disorder prediction 41 79 - -
Bma05g00788 290 Pfam Plants and Prokaryotes Conserved (PCC) domain 103 216 IPR005175 -
Bma05g00788 290 MobiDBLite consensus disorder prediction 227 263 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g00788 Bma12g00127 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00788 Bma-Chr5:44846922 Bma06g01246 Bma-Chr6:49618595 3.94E-72 dispersed
Bma02g01149 Bma-Chr2:53432008 Bma05g00788 Bma-Chr5:44846922 1.59E-103 transposed
Bma04g00797 Bma-Chr4:9100592 Bma05g00788 Bma-Chr5:44846922 1.06E-70 transposed
Bma12g00127 Bma-Chr12:1877282 Bma05g00788 Bma-Chr5:44846922 3.59E-154 wgd
Bma14g00570 Bma-Chr14:6137009 Bma05g00788 Bma-Chr5:44846922 7.06E-14 wgd
Bma05g00788 Bma-Chr5:44846922 Bma07g01622 Bma-Chr7:51775117 2.11E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00788 - - qsu:112016192 321.627