Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00791 ATGGAGATGGATGAGGAAATGGACGTGGAGGCTGATGTTGAAGCTCAGCCGGTTGTGTTTGAGGCGTATGAAGTGGACGTTGAGTATGAGTTTGATGCGAGTATGTACTTTGACTTTACTCGAGCTGAAAGTCGGGCCGAGGCTCGTCTGACTGAACTTTGGTTCGAATCTGCTAAAAGTTATTCTCCTTCCCCATTTGTGGCAAACTTATTTTTAAGGGAGTCGACCCTTTTGGAAACTATCAATTCCTCTCAAGAGTCAGGCAAGACAGGTGAGCCGCACGGAGAAGATAACAATTTAAACAACGGCCCAGTATTCTCTGTGGTTGATGCAAATAATAGAGGCACTATTGCACGTAAGCCATTTGTGCCGAGGAGCTCAACTTTGATGAAGCCAACAGCAAGTCAATTGGCCAAACAAAATTTGTTTTCTCATTTCAGTCGTTCCAGATTTCAAAAGTTACCCTTGGACAATGAAGTGAAGGGTTTCTGTAATTCTGCTGGTGTTGAAAGCCATGCTACAAAGAAACAAAAGCTAGATGGAGGTTTCTCGCGGAAGGTCATTGAAGAGCAGCCGACTAATTTTTTCCATAAGGTTTCGAGAAAGGATGTACCTGTTGACAAGACTGCTATATTTTCCAAACTGAAACTTACAATTCCCAGAGAGCCTGACCTTGTAACAGCACATAGGGCTCAGAGGATAAGATCTAAGATTAGTAGTACGGAATTAGTGCAGGAGACTATGGAAACTCGTCAGTTTAAAGCCCGTCCGCTGAACAGAAAAATTTTAGAGGCTCCTTCCATTCCTCTGGCCAAGAAAAGTACTCCTAAATTGCCAGAGTTTCATGAATTTCACTTGAAGACATCAGAGAGAGCAACTCAGAATTCTTCTGCTGTTTTGTCAAACTCATCTCATTGCAGTGATCTTGATAAGGTGCCAGATAAACGTGGTACATTTCATGCTTCAAAGAACAGTAACAAGGAGAGGGAAAGGTCGAATACTGTAGGTTCTCCAAAGAAGGATGGACATTCTATGATGCAGAACTTTAAGGCTCATCTGCTTAATAGAAAGATATTTTTAAGTAAAGGCGATATCGGTATCTTCAGAAATACAAAACGTGAAGCCACAGTACCAATGGAATTCAATTTGCATACTCAGAAGAGGATTCATCTACCACCAACTGACCTTTTCAGTAAACTCTCCTTGAAATCAAATCTCCCACCTGATAATGGATTGAAGATGAAATTACCTCAGCCTACATCCTTATTCAAGAAGGACTCAAAAGAAAATAGATCCGTATGTCTCCAAATAGAACATGAGATGATGCCAGTAGTTAAACAGAAGCCTCCCCTCGTCGAAAACAGATTAAATTTGGTGCGTTAG 1383 41.43 MEMDEEMDVEADVEAQPVVFEAYEVDVEYEFDASMYFDFTRAESRAEARLTELWFESAKSYSPSPFVANLFLRESTLLETINSSQESGKTGEPHGEDNNLNNGPVFSVVDANNRGTIARKPFVPRSSTLMKPTASQLAKQNLFSHFSRSRFQKLPLDNEVKGFCNSAGVESHATKKQKLDGGFSRKVIEEQPTNFFHKVSRKDVPVDKTAIFSKLKLTIPREPDLVTAHRAQRIRSKISSTELVQETMETRQFKARPLNRKILEAPSIPLAKKSTPKLPEFHEFHLKTSERATQNSSAVLSNSSHCSDLDKVPDKRGTFHASKNSNKERERSNTVGSPKKDGHSMMQNFKAHLLNRKIFLSKGDIGIFRNTKREATVPMEFNLHTQKRIHLPPTDLFSKLSLKSNLPPDNGLKMKLPQPTSLFKKDSKENRSVCLQIEHEMMPVVKQKPPLVENRLNLVR 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44916735 44920984 + Bma021893.1 Bma05g00791 82875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00791 460 PANTHER TARGETING PROTEIN FOR XKLP2 10 428 IPR009675 GO:0005819|GO:0005874|GO:0032147|GO:0060236
Bma05g00791 460 MobiDBLite consensus disorder prediction 292 344 - -
Bma05g00791 460 MobiDBLite consensus disorder prediction 82 104 - -
Bma05g00791 460 MobiDBLite consensus disorder prediction 308 337 - -
Bma05g00791 460 PANTHER OS06G0130200 PROTEIN 10 428 - -
Bma05g00791 460 Pfam Cell cycle regulated microtubule associated protein 215 383 IPR027330 -
Bma05g00791 460 MobiDBLite consensus disorder prediction 292 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00791 - - - pavi:110773480 429.483
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00791 Bma12g00115 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00743 Bma-Chr3:6750680 Bma05g00791 Bma-Chr5:44916735 1.40E-06 dispersed
Bma05g00791 Bma-Chr5:44916735 Bma08g00566 Bma-Chr8:33836517 6.12E-06 dispersed
Bma12g01146 Bma-Chr12:43922148 Bma05g00791 Bma-Chr5:44916735 9.64E-67 transposed
Bma12g00115 Bma-Chr12:1764413 Bma05g00791 Bma-Chr5:44916735 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g451 Blo02g01073 . . . . . . . . Cmo16g01075 . . . . . Cpe14g00849 . . . . . . . . Cla10g00314 Cam10g0329 Cec10g0342 Cco10g0334 Clacu10g0325 Cmu10g1165 Cre10g0575 . . . . Lsi07g01363 . . Cme06g02648 . . . . . . Bma05g00791 Bma12g00115 . . . . Cma16g01029 . Car16g00980 . . . . . . . . . . . . . . . . . Csa03g00337 Chy06g01988 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007341 0 3 1 2 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00791 Bma_Chr05 FPKM 0.0 0.228957 0.0 0.0 0.190817 0.0 0.0 0.0 0.214598 0.0