Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00795 ATGCTATATATGAGGAGGGATAAGCTAATGAACAAGGTTTCAGAAAGTATATGGGGGATTATCAGATCAGATGATGGCATGAAATCTGAAATCCAAGAGACAGTACAATCTGTATACAATAAGTTGGCGAATCCAAGAGCAAATGATGAAAGTGGATCTTCTGCCAATGATTCAGTCGTAGTTCGAAAGGAACCTGATAATAATGATAGTTACAAAATTCCCTTGGGTAAAGTTAAAGATAATCTCTCTGCTAACGATCCTAGAGAACCACCAGGGTTCTTTCTTGCCGGAAATCATGAGAATAATCAACTTGAGCAACAGCAGAAAGAGTCTATCCAGCCTGATAGTCAACAAGCGGAAGAGCTTGGGGAACAGCTAGAAAAAACACACCAATCCAAGGATATATTTGAGGTAGATGATGATGAGGCTGGAGTACCACCTGGCTTTTCCGCCAACATGGAGAGCAAGCTACTCCCAGATGGTAGTGATGAAGATCCCGAAGTGCCTCCAGGTTTTGGTTGA 522 41.76 MLYMRRDKLMNKVSESIWGIIRSDDGMKSEIQETVQSVYNKLANPRANDESGSSANDSVVVRKEPDNNDSYKIPLGKVKDNLSANDPREPPGFFLAGNHENNQLEQQQKESIQPDSQQAEELGEQLEKTHQSKDIFEVDDDEAGVPPGFSANMESKLLPDGSDEDPEVPPGFG 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44951146 44952195 - Bma021896.1 Bma05g00795 82879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00795 173 MobiDBLite consensus disorder prediction 121 140 - -
Bma05g00795 173 PANTHER EXPRESSED PROTEIN 6 173 - -
Bma05g00795 173 MobiDBLite consensus disorder prediction 42 61 - -
Bma05g00795 173 MobiDBLite consensus disorder prediction 99 120 - -
Bma05g00795 173 MobiDBLite consensus disorder prediction 42 173 - -
Bma05g00795 173 PANTHER ANTIGENIC HEAT-STABLE PROTEIN 6 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00795 - - - qsu:112021084 162.155
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g433 Blo02g01077 . . . Bpe05g00616 . . . Cmo06g00757 . . . . . Sed03g1293 . . Bhi11g00230 Tan01g1957 Cmetu06g0126 . Hepe06g1192 Mch10g1486 . Cla10g00319 Cam10g0334 Cec10g0348 Cco10g0340 Clacu10g0331 Cmu10g1171 Cre10g0581 . . Cone6ag0732 Cone9ag0736 Lsi07g01368 . . Cme06g02653 . . . . . . Bma05g00795 . . . . Cma06g00733 . Car06g00653 . Cpe08g00785 . . . . . . . . . . . . . . . . . Chy06g01983 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010691 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00795 Bma_Chr05 FPKM 7.556685 8.514977 8.370709 8.297791 10.532926 11.708754 11.414738 14.645976 14.2304 16.003502