Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00804 ATGGCGTCGAGTTCTTCAAAAAAACACTCTCTTTACAGAGGAATTCGTTGCAGAAGCGGAAAATGGGTGACGGAAATCCGGGAGCCACGAAAGTCTAACAGAATTTGGCTCGGAACCTTCCCCTCGCCTGAAATGGCGGCAGCAGCCCACGACGTCGCAGCTCTAGCACTCAGAGGAAACAAAGCCACTCTTAACTTTCCGGCGCTTGTGGGTTCTTATCCAGTTCCTGTTTCTACCTCCCCGGCCGATATAAGAGCAGCTGCTTCAGCCGCCGCAACTCTGATGAATGTTAGCTTTAACGACAATGGTGGTGGGACGGAGCAGTTCTGTAATTTTAGCGAAAATTTTGTTGACGAGGAGGAGATTTTCGACATGCCGAATTTGCTGGTGGATATGGCGGGAGGAATGTTAATGTCACCGCCCAGAATGAACTTGCCGCCGGAATATGACGGGGTTGGCTTTTCCAATGGAGGAGAGAATCTGTGGAGCCATTTTTGA 498 50.0 MASSSSKKHSLYRGIRCRSGKWVTEIREPRKSNRIWLGTFPSPEMAAAAHDVAALALRGNKATLNFPALVGSYPVPVSTSPADIRAAASAAATLMNVSFNDNGGGTEQFCNFSENFVDEEEIFDMPNLLVDMAGGMLMSPPRMNLPPEYDGVGFSNGGENLWSHF 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45399487 45399984 - Bma021907.1 Bma05g00804 82888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00804 165 Gene3D AP2/ERF domain 11 69 IPR036955 GO:0003700|GO:0006355
Bma05g00804 165 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700|GO:0006355
Bma05g00804 165 CDD AP2 10 69 IPR001471 GO:0003700|GO:0006355
Bma05g00804 165 PRINTS Ethylene responsive element binding protein signature 49 69 IPR001471 GO:0003700|GO:0006355
Bma05g00804 165 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700|GO:0006355
Bma05g00804 165 Pfam AP2 domain 11 59 IPR001471 GO:0003700|GO:0006355
Bma05g00804 165 PANTHER ETHYLENE RESPONSE FACTOR 1 165 - -
Bma05g00804 165 SMART rav1_2 11 73 IPR001471 GO:0003700|GO:0006355
Bma05g00804 165 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 165 - -
Bma05g00804 165 SUPERFAMILY DNA-binding domain 10 68 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00804 Bma-Chr5:45399487 Bma10g00080 Bma-Chr10:807382 5.49E-46 dispersed
Bma12g01132 Bma-Chr12:43705302 Bma05g00804 Bma-Chr5:45399487 2.47E-18 wgd
Bma12g00104 Bma-Chr12:1683182 Bma05g00804 Bma-Chr5:45399487 1.74E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57338 PF00847 AP2 1.70E-10 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00804 - - jre:109011571 200.29