Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma05g00808 | ATGGCGTCTTCTTCTTCAGGCACCGGAAGCAACTATGATACGCCGTGGGTGGAGAAGTACAGGCCAAACAAGGTCGCAGACATTGTTGGAAATGAAGACGCTGTTTCAAGGCTCCAAGTCATTGCCCGCGATGGGAACATGCCAAACCTCATCTTAGCCGGGCCTCCTGGAACTGGTAAAACAACTAGCATACTTGCTCTTGCGCACGAGCTGTTAGGACCAAATTACAAGGAGGCTGTGTTGGAGCTAAATGCATCTGATGACAGGGGAATAGATGTTGTGAGGAACAAAATTAAAATGTTTGCCCAGAAAAAAGTAACTCTGGCACCGGGCAAGCATAAAATAGTTATCTTGGATGAAGCTGATAGCATGACATCTGGAGCACAACAAGCTTTGAGGAGGACTATGGAAATATATTCAAACACTACCCGCTTTGCTCTTGCATGCAATACATCTGCAAAAATAATTGAGCCTATTCAGAGTAGATGTGCGATTGTCAGATATTCAAGATTATCTGATCAAGAGATACTTGGTCGTCTGATGGTGGTTATTCAAGCTGAAAGGGTTCCCTATGTGCCAGAGGGCCTTGAGGCAATTATCTTTACAGCTGATGGAGATATGAGACAGGCGTTGAACAACTTACAAGCTACATACAGCGGATTTCGATTTGTTAACCAAGACAATGTGTTCAAGGTTGTCTGTGATCAGCCTCATCCGTTGCATGTGAAGAACATGGTACGCAACGTGATTGAAGGAAAATTTGACGAAGCTTGTTCAGGTCTGAAGCAACTATACGACCTGGGTTATTCTCCCACTGACATTATCACAACCCTTTTCCGCATCATTAAAAACTATGACATGGCTGAGTTTCTGAAATTGGAATTTATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCATATCTTCAGTTATGTGGTCTTTTGGCCAAACTTTCTATTGCTCGTGTAACAGCCAAAGCTGAATGA | 1002 | 43.31 | MASSSSGTGSNYDTPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLAPGKHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRYSRLSDQEILGRLMVVIQAERVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVVCDQPHPLHVKNMVRNVIEGKFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEFLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIARVTAKAE | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 45416612 | 45418453 | - | Bma021911.1 | Bma05g00808 | 82892 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma05g00808 | 333 | SMART | AAA_5 | 46 | 172 | IPR003593 | - | |
Bma05g00808 | 333 | Gene3D | - | 8 | 171 | IPR027417 | - | |
Bma05g00808 | 333 | PANTHER | REPLICATION FACTOR C SUBUNIT 2 | 8 | 330 | - | - | |
Bma05g00808 | 333 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 8 | 330 | - | - | |
Bma05g00808 | 333 | Gene3D | - | 237 | 328 | - | - | |
Bma05g00808 | 333 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 12 | 232 | IPR027417 | - | |
Bma05g00808 | 333 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 236 | 326 | IPR008921 | GO:0003677|GO:0006260 | |
Bma05g00808 | 333 | CDD | HLD_clamp_RFC | 171 | 233 | - | - | |
Bma05g00808 | 333 | Gene3D | - | 172 | 235 | - | - | |
Bma05g00808 | 333 | Pfam | Replication factor C C-terminal domain | 237 | 322 | IPR013748 | - | |
Bma05g00808 | 333 | CDD | AAA | 29 | 166 | - | - | |
Bma05g00808 | 333 | Pfam | ATPase family associated with various cellular activities (AAA) | 50 | 168 | IPR003959 | GO:0005524|GO:0016887 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00807 | Bma-Chr1:7547519 | Bma05g00808 | Bma-Chr5:45416612 | 4.26E-25 | dispersed | |
Bma04g00016 | Bma-Chr4:217900 | Bma05g00808 | Bma-Chr5:45416612 | 1.33E-64 | dispersed | |
Bma05g00808 | Bma-Chr5:45416612 | Bma06g01245 | Bma-Chr6:49607656 | 9.62E-18 | dispersed | |
Bma05g00808 | Bma-Chr5:45416612 | Bma02g00213 | Bma-Chr2:2279343 | 1.07E-55 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma05g00808 | K10755 | - | csv:101208984 | 612.068 |