Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00808 ATGGCGTCTTCTTCTTCAGGCACCGGAAGCAACTATGATACGCCGTGGGTGGAGAAGTACAGGCCAAACAAGGTCGCAGACATTGTTGGAAATGAAGACGCTGTTTCAAGGCTCCAAGTCATTGCCCGCGATGGGAACATGCCAAACCTCATCTTAGCCGGGCCTCCTGGAACTGGTAAAACAACTAGCATACTTGCTCTTGCGCACGAGCTGTTAGGACCAAATTACAAGGAGGCTGTGTTGGAGCTAAATGCATCTGATGACAGGGGAATAGATGTTGTGAGGAACAAAATTAAAATGTTTGCCCAGAAAAAAGTAACTCTGGCACCGGGCAAGCATAAAATAGTTATCTTGGATGAAGCTGATAGCATGACATCTGGAGCACAACAAGCTTTGAGGAGGACTATGGAAATATATTCAAACACTACCCGCTTTGCTCTTGCATGCAATACATCTGCAAAAATAATTGAGCCTATTCAGAGTAGATGTGCGATTGTCAGATATTCAAGATTATCTGATCAAGAGATACTTGGTCGTCTGATGGTGGTTATTCAAGCTGAAAGGGTTCCCTATGTGCCAGAGGGCCTTGAGGCAATTATCTTTACAGCTGATGGAGATATGAGACAGGCGTTGAACAACTTACAAGCTACATACAGCGGATTTCGATTTGTTAACCAAGACAATGTGTTCAAGGTTGTCTGTGATCAGCCTCATCCGTTGCATGTGAAGAACATGGTACGCAACGTGATTGAAGGAAAATTTGACGAAGCTTGTTCAGGTCTGAAGCAACTATACGACCTGGGTTATTCTCCCACTGACATTATCACAACCCTTTTCCGCATCATTAAAAACTATGACATGGCTGAGTTTCTGAAATTGGAATTTATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCATATCTTCAGTTATGTGGTCTTTTGGCCAAACTTTCTATTGCTCGTGTAACAGCCAAAGCTGAATGA 1002 43.31 MASSSSGTGSNYDTPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLAPGKHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRYSRLSDQEILGRLMVVIQAERVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVVCDQPHPLHVKNMVRNVIEGKFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEFLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIARVTAKAE 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45416612 45418453 - Bma021911.1 Bma05g00808 82892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00808 333 SMART AAA_5 46 172 IPR003593 -
Bma05g00808 333 Gene3D - 8 171 IPR027417 -
Bma05g00808 333 PANTHER REPLICATION FACTOR C SUBUNIT 2 8 330 - -
Bma05g00808 333 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 8 330 - -
Bma05g00808 333 Gene3D - 237 328 - -
Bma05g00808 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 232 IPR027417 -
Bma05g00808 333 SUPERFAMILY post-AAA+ oligomerization domain-like 236 326 IPR008921 GO:0003677|GO:0006260
Bma05g00808 333 CDD HLD_clamp_RFC 171 233 - -
Bma05g00808 333 Gene3D - 172 235 - -
Bma05g00808 333 Pfam Replication factor C C-terminal domain 237 322 IPR013748 -
Bma05g00808 333 CDD AAA 29 166 - -
Bma05g00808 333 Pfam ATPase family associated with various cellular activities (AAA) 50 168 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00807 Bma-Chr1:7547519 Bma05g00808 Bma-Chr5:45416612 4.26E-25 dispersed
Bma04g00016 Bma-Chr4:217900 Bma05g00808 Bma-Chr5:45416612 1.33E-64 dispersed
Bma05g00808 Bma-Chr5:45416612 Bma06g01245 Bma-Chr6:49607656 9.62E-18 dispersed
Bma05g00808 Bma-Chr5:45416612 Bma02g00213 Bma-Chr2:2279343 1.07E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00808 K10755 - csv:101208984 612.068