Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00809 ATGGCTTCCTCCGAAGGCCCCGTCGACTCGACGCCGTTTCTGGCGAATCATAGCCGGTCTTCTAGCGAAACGAATTCCAGCAGTCACTTTGTTCAGAGGCAGAGCCTGCGTCAGGCGGCGAGGTTTTTGAGGCAAGCGAGCAATCGGAGGACGTTGCGCGAGTCCTCGATGCGGGTGAGAGAGACTGCAGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCCAAACCGATTGTGATTCTAGATATCGTTTGGAATTTCGCATTTGTGGCCGTGGCTGCTATAATACTGGTTCTGAGCCGTAAGGAGTCTCCGAATGTGCCGTTGAGGCTGTGGCTCGCGGGATATGGTTTCCAATGCGTTCTTCATATAGTGTGTGTTTGTTCCGAATATAGACGTCAGAGACAACGGCTCCGAATTCACATGGTTAATTCTGTCGGAGACGGAAACCGGACTCCCGGGGGATCAAGTTCCGGTTCGAGGCAGAATTTATCGTTGGGGCAATTAAATGAGGAGAACCCGAGCGTTGCAAAACATCTCGAGTCTGCAAATACGATGTTTTCGTTCGTCTGGTGGATTGTTGGATTCTATTGGGTCTCAGCTGGAAGTCAAGGTTTAGCTCATGCCTCTCCTCTGCTTTACTGGCTGTGCCTAATCTTCTTAGGATTCGATGTATTTTTCGTCGTTTTCTGCGTTGCTTTGGCCTGTGTAATCGGCATTGCTGTTTGTTGCTGTCTCCCGTGTATTATTGCGCTTCTATATGCCGTGGCTGACCAGCAGGAAGGAGCATCAAGAGAAGATATAGATCAATTGTCTAAATTCAAATTCAGAAAATGTGATGATTCGGGTGAGCTAACCAGCGATGTACAAGAATCTTCGGGAGGAATAATGACAGAATGTGGCACTGATTCGCCGATCGAACATGTTCTTTCGCAGCAAGATGCAGAATGCTGCATCTGCCTTTCTGCTTATGATGATGGAGTTGAACTGAGGGAACTTCCTTGTGGCCACCATTTTCACTGTGCATGCGTAGACAAATGGCTACACATTAATGCTACTTGTCCGCTCTGTAAATACGACATTCTGAAGTTTAACAGCCACGGACAAGACGAAGTTTGA 1125 48.36 MASSEGPVDSTPFLANHSRSSSETNSSSHFVQRQSLRQAARFLRQASNRRTLRESSMRVRETAAEQLEERQSDWAYSKPIVILDIVWNFAFVAVAAIILVLSRKESPNVPLRLWLAGYGFQCVLHIVCVCSEYRRQRQRLRIHMVNSVGDGNRTPGGSSSGSRQNLSLGQLNEENPSVAKHLESANTMFSFVWWIVGFYWVSAGSQGLAHASPLLYWLCLIFLGFDVFFVVFCVALACVIGIAVCCCLPCIIALLYAVADQQEGASREDIDQLSKFKFRKCDDSGELTSDVQESSGGIMTECGTDSPIEHVLSQQDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLHINATCPLCKYDILKFNSHGQDEV 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45420274 45421968 + Bma021912.1 Bma05g00809 82893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00809 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 365 IPR013083 -
Bma05g00809 374 PANTHER TARGET OF ERK KINASE MPK-1 2 374 - -
Bma05g00809 374 Pfam Ring finger domain 318 360 IPR001841 -
Bma05g00809 374 ProSiteProfiles Zinc finger RING-type profile. 319 360 IPR001841 -
Bma05g00809 374 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 374 - -
Bma05g00809 374 SMART ring_2 319 359 IPR001841 -
Bma05g00809 374 CDD RING-H2_RNF111_like 318 362 - -
Bma05g00809 374 SUPERFAMILY RING/U-box 310 365 - -
Bma05g00809 374 MobiDBLite consensus disorder prediction 1 33 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01042 Bma-Chr2:51943709 Bma05g00809 Bma-Chr5:45420274 1.08E-145 dispersed
Bma05g00809 Bma-Chr5:45420274 Bma14g01932 Bma-Chr14:41238035 2.05E-107 dispersed
Bma12g00096 Bma-Chr12:1629114 Bma05g00809 Bma-Chr5:45420274 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00809 - - csv:101209228 536.954