Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00817 ATGGATGGGAGAGAAGCTATGGCTCTTTCTGGTGGTTCAGCTTCATATTACATTCACAGAGGAGGTTTTAGTGGGCCTGGTTTGGGAAATCAGACCCCCAGTCTGCACTCCACACAGGATTTCAGGCCATTTTCGAACCCCACCATTCCCACTCAGCCAAATGCTCGGTGTGGCTCAGTAGGACCGGCGTTTTCAGTTGAGTCTTCGCAGGGAAATTACTCTCTTGGCATTAATGTCGGAGTGTCAGCCGGAGCACCCGCTAATGAACCAGTGCGGAAGAAAAGAGGGAGGCCTCGGAAATACGTACCTGATGGGCCAGTTTCACTGGGACTGTCTCCGATGTCTGTTAATTCCAATCAAAACTCTGGTCCGAATTCAGTGAACCCTAAACGGCCTAGGGGAAGACCGCCTGGTTCTGGAAGGAAACAACAATTAGCGTTGCTTGGTGAATGGATGGACAGTTCGGCTGGACAAGCTTTTGCGCCTCATGTCATGCACATTGGAGCTGGAGTGGACATTGTTGCAAAAATATTGTCATTTTCGCAACAGAAGGGAAGAGCTGTTTGCATAATGTCTGGAAACGGTACAGTTTCTTCCATGACACTTCGTCAACCCGCATCCTCGGAAGTGGGCCGAAATTATGAGGGGCGATTCCAGATATTGTGTTTATCGGGTTCTTACTTGGTCTCTAAAGATGGAGCCCCGCAAAATCGAATTGGGGGAGTAAGTGTTTCTCTTGCCAGTCCTGACGGTCAGGTGATTGGCGGCGCTGTCGATACGCTCATTGCAGCTGCCCCTGTTCAGGTAATAGTATCGAGTTTTGTTTACGGCGGTTCAAAGACAAAGAAGAACAAGCAAGTGGCCGCTCCGAAAAGTGACGACAGTTCCGAGGCTCAACCCAGTGATGAATTAGCTCCGCAGTCAACCACTCCCGATCAAACTTACGCTCCATCTACAACCGGGTTTTGGCCAGGGTCCAGTCCCGTCCTCAAAAACCCTCATTCCGGCATTGATTTAAGGCGAGGATGA 1029 50.05 MDGREAMALSGGSASYYIHRGGFSGPGLGNQTPSLHSTQDFRPFSNPTIPTQPNARCGSVGPAFSVESSQGNYSLGINVGVSAGAPANEPVRKKRGRPRKYVPDGPVSLGLSPMSVNSNQNSGPNSVNPKRPRGRPPGSGRKQQLALLGEWMDSSAGQAFAPHVMHIGAGVDIVAKILSFSQQKGRAVCIMSGNGTVSSMTLRQPASSEVGRNYEGRFQILCLSGSYLVSKDGAPQNRIGGVSVSLASPDGQVIGGAVDTLIAAAPVQVIVSSFVYGGSKTKKNKQVAAPKSDDSSEAQPSDELAPQSTTPDQTYAPSTTGFWPGSSPVLKNPHSGIDLRRG 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45468933 45471112 - Bma021921.1 Bma05g00817 82901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00817 342 MobiDBLite consensus disorder prediction 81 142 - -
Bma05g00817 342 CDD DUF296 162 274 IPR005175 -
Bma05g00817 342 MobiDBLite consensus disorder prediction 22 44 - -
Bma05g00817 342 ProSiteProfiles PPC domain profile profile. 157 295 IPR005175 -
Bma05g00817 342 Gene3D - 162 289 - -
Bma05g00817 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 162 275 IPR005175 -
Bma05g00817 342 MobiDBLite consensus disorder prediction 282 342 - -
Bma05g00817 342 PRINTS AT-hook-like domain signature 128 139 IPR017956 GO:0003677
Bma05g00817 342 PRINTS AT-hook-like domain signature 92 102 IPR017956 GO:0003677
Bma05g00817 342 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 339 - -
Bma05g00817 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 158 277 - -
Bma05g00817 342 MobiDBLite consensus disorder prediction 291 326 - -
Bma05g00817 342 MobiDBLite consensus disorder prediction 111 128 - -
Bma05g00817 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 339 IPR039605 GO:0003680
Bma05g00817 342 MobiDBLite consensus disorder prediction 27 44 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g00817 Bma12g00188 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01062 Bma-Chr2:52212006 Bma05g00817 Bma-Chr5:45468933 2.24E-79 dispersed
Bma05g00817 Bma-Chr5:45468933 Bma06g01189 Bma-Chr6:48961601 2.93E-92 dispersed
Bma12g00375 Bma-Chr12:7214816 Bma05g00817 Bma-Chr5:45468933 6.48E-49 transposed
Bma12g01151 Bma-Chr12:43984444 Bma05g00817 Bma-Chr5:45468933 5.44E-43 wgd
Bma12g00084 Bma-Chr12:1552325 Bma05g00817 Bma-Chr5:45468933 6.62E-38 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00817 - - mnt:21407035 416.387