Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00821 ATGTCTTCCCCGACCAAACGGCGAGAAATGGATTTGATGAAACTGATGATCAGTGATTACAAGGTGGAGATGATCAACGATAGCATGCAAGAGTTCTATGTCGATTTCCATGGACCTAAAGACAGCCCATATCAAGGGGGTGTGTGGAGGATAAGAGTGGAGTTGCCTGATGCTTATCCTTATAAATCACCATCAATTGGCTTTGTCAACAAAATTTATCATCCAAATGTTGATGAAATGTCCGGCTCTGTTTGTTTAGACGTTATCAACCAGACGTGGAGCCCCATGTTCGGTTTCAGTCTCGTCTATAACTTCTATTTTGCATGTTTATGTTCATTTGCAGACCTTGTAAATGTGTTTGAAGTGTTCCTTCCCCAGCTTCTATTGTATCCCAACCCATCGGACCCGTTGAATGGAGAAGCTGCGGCCCTTATGATGCGCGATCGTTCGACTTACGAACAACGAGTGAAAGAGTACTGCGAGAAATATGCAAAGCCAGAAGACAATGGAGCTCGGGAGGAAGAAAAATCGAGCGACGAGGAGCTGAGCGAAGATGATTACGGGTCGAGTGACGAGGCAGTGGCAGGTCCGGCTGATCCTTAA 603 45.61 MSSPTKRREMDLMKLMISDYKVEMINDSMQEFYVDFHGPKDSPYQGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFGFSLVYNFYFACLCSFADLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRSTYEQRVKEYCEKYAKPEDNGAREEEKSSDEELSEDDYGSSDEAVAGPADP 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45575330 45577106 - Bma021931.1 Bma05g00821 82905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00821 200 Gene3D Ubiquitin Conjugating Enzyme 1 178 IPR016135 -
Bma05g00821 200 MobiDBLite consensus disorder prediction 163 177 - -
Bma05g00821 200 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Bma05g00821 200 Pfam Ubiquitin-conjugating enzyme 11 159 IPR000608 -
Bma05g00821 200 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 165 IPR000608 -
Bma05g00821 200 SUPERFAMILY UBC-like 4 165 IPR016135 -
Bma05g00821 200 SMART ubc_7 4 165 - -
Bma05g00821 200 CDD UBCc 7 160 IPR000608 -
Bma05g00821 200 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 107 - -
Bma05g00821 200 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 112 200 - -
Bma05g00821 200 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 112 200 - -
Bma05g00821 200 MobiDBLite consensus disorder prediction 163 200 - -
Bma05g00821 200 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00821 K10576 UBE2H, UBC8; ubiquitin-conjugating enzyme E2 H [EC:2.3.2.23] - ming:122071115 336.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00821 Bma07g01664 CCT
Bma05g00821 Bma07g01664 ECH
Bma05g00821 Bma12g00072 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00821 Bma-Chr5:45575330 Bma12g01029 Bma-Chr12:42378687 1.51E-100 dispersed
Bma12g00072 Bma-Chr12:1278083 Bma05g00821 Bma-Chr5:45575330 2.21E-124 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g14 Blo02g01112 . Bda06g00114 Bda08g00514 Bpe05g00648 . Bma07g01664 . Cmo06g01099 . . . Car02g01207 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00821 Bma12g00072 . . . . . Car06g00910 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000389 3 10 1 5 4 3 5 3 3 3 3 3 5 4 4 4 3 4 5 3 4 3 3 4 4 3 4 10 11 3 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00821 Bma_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0