Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00822 ATGTCGCAAGGCTATGCCATCGAACTTTACTTCGATCCGGCTCTCGAAAATCAGGTGTTGAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACTCAACTCATCGAAATCGAATCCCGCCCTCACATCACCCTCTTCTCCACTACCCTCCTCGAACCTGCAAAGCTTCAAGTCATTCTCAAAACCTTGGCTTCCAGGCAAGAACCGTTGCCTCTCTCTTTCTCGTCTGTTGGAAGCCTTCCCAGCGACAACAATGTTCTTTTCTCTGTTTTGAAAAATGGAGTTGAAGTGAAGCTTCAAAGAAATGCACTAAGTGTGCTGGAACATCCGACGGGGAATGAAGACGATGATCATGATTTTGACAATTCTACCTGTAGCTCTGACATTGGCGAAAAGGACAATGACATATCCAGCAATATGGTGTTCCCTAAACTTGGTAAATCCAAATTTAGGCATGCTAAGCCTTGGTTGCCTTGTACATCCTCAAAGTTTACTGGTCGCGGAAGTTATCGAGAAGTTCATTCTATTCACATGCCTCAACTGGCAAATGGCCTTTCCAATACTTCAAGGGAACACATTCTTACTGCAGTGCAGCGGCATTTTGCATTTCAGGTCTCTCTCTCTGTCTCTGTCTCTCTCTTGATTATCTCTCTCTTTCTTTCTCCGTGA 672 44.94 MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTTLLEPAKLQVILKTLASRQEPLPLSFSSVGSLPSDNNVLFSVLKNGVEVKLQRNALSVLEHPTGNEDDDHDFDNSTCSSDIGEKDNDISSNMVFPKLGKSKFRHAKPWLPCTSSKFTGRGSYREVHSIHMPQLANGLSNTSREHILTAVQRHFAFQVSLSVSVSLLIISLFLSP 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45578562 45582135 - Bma021932.1 Bma05g00822 82906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00822 223 MobiDBLite consensus disorder prediction 110 129 - -
Bma05g00822 223 MobiDBLite consensus disorder prediction 111 129 - -
Bma05g00822 223 SUPERFAMILY LigT-like 4 112 IPR009097 -
Bma05g00822 223 Gene3D Cyclic phosphodiesterase 1 146 - -
Bma05g00822 223 PANTHER - 1 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00822 - - - csv:101209634 163.31
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00822 Bma12g00071 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00970 Bma-Chr6:46259977 Bma05g00822 Bma-Chr5:45578562 2.76E-53 transposed
Bma09g00248 Bma-Chr9:10927900 Bma05g00822 Bma-Chr5:45578562 2.86E-49 transposed
Bma13g00518 Bma-Chr13:10283436 Bma05g00822 Bma-Chr5:45578562 8.24E-49 transposed
Bma14g01523 Bma-Chr14:30727113 Bma05g00822 Bma-Chr5:45578562 9.13E-58 transposed
Bma12g00071 Bma-Chr12:1271464 Bma05g00822 Bma-Chr5:45578562 3.28E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g15 Blo02g01113 Blo03g00218 Bda06g00116 Bda08g00513 Bpe05g00649 Bpe07g00102 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0791 Cone9ag0793 . . . . . . . . . . Bma05g00822 Bma12g00071 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00586 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008271 2 1 3 5 0 1 1 0 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00822 Bma_Chr05 FPKM 0.0 0.833731 0.812979 1.479364 3.537541 1.446971 2.11944 4.622159 4.59542 2.002764