Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00825 ATGAAGAAGTTCAGCCGTAAGTTCTCTCCCCACTGGATCAAATCTTTGGTTTCTCATGGCCTCCATCCCCAAGCTCTCGAGGCCTCTACTTCCTTTCTCCCCAATCCCCTTCCCACGGATCAATCTTACGCCCTCTTCCTTAAATCCGGCCATTCTCTCCACCCCATCCTCTCCGCCTCCCTCATAACTCACTTCTCCCGGTTCGGAGACTTTTCTCGTTCTTATCGATTCCTCTGGGATACCCAGTTCCCAGATATAGTTAACTTCAACGTTCTCATTTCTGGGTTTGCTCGTGTTGGTCAAACCCAATCGGTTTTCGAGCTCTTTGATGAGTTGAGACATTTGGGTCTTGAGCCCGATGTGTTTACTTTGAGTTCGTTGGTTAAAGGTTGCGATATTGTCGAAGAGAATGAGATTGTTCATGGAGTTGCTTTCAGATTGGGGTTTGATTCGGGAGCCTATTTAGTCAGTGGATTTATTGAAAATTATTCTAGAGCTGGAGATATTTTATCGGCTGAGAAATGTTTCGAGGATTGCTTCGTTGCAGAAGCTGTGGTTTGTACTACTATGGTTTGTGGTTACGTGTGGAATGGTGAGTACGAGAAAAGTAAGAAGATATTTATGGAAATGACTAAATTGAGTTTGGAAATAAACGAGTTTAGTTGCACTGGTGTGCTTGGAGGAATTTTTTATGGGGAAGAAGGAAAAATAATTCACACGCTGACAATGAAAAGGGGTTTATTATGTGGGTGTTCGATTCATTTGAACAATGCAATTATAAACATGTATTCTAGGTGTGGTTATAAATCTGATGCAGCGAAAGTGTTCGATGAAATGAGTGAACCAGATATTGTCTCTTGGACTGGAAGAATTGGGGCTGCTCTAGATGAAGGAGAAGCTTTGGAATGTTTTCGATATCTACGGGCCAGAGATATTGAGTTGAACGAGTATCCTATCGTCAATCTTCTTTCAGTAATTACAAGCTCTGGAATGTTATTGTCTGGTAAGAAAATTCAAGCACATTGTCATAAAGATGGACATTTGTTATTTATTTCTGTCAGCAATCATTTAATATCTATGTATAGTAAACATGGGCAAATGGACGAGGCCAAGCTTGTATTCAATGACATGGTATCTATAGATTCTGTTTCTTGCAATTCTCTTATTGATGGCTATTCTGAAAATGGACTTCTCAAGGAGACTTTCGCGGCATTCTCTCAAATGCGCCTTTTTTCCTTTCACCCTGATTTATATACTTTTGTTAGCCTTCTTAAAGCTGCCGCAAAATCAAAGTCTCCAAAACTGGCAGTGCAAATCCATTGTTATATTGTAAAATGCAGATTTGTGGCTGATCATTCTATCATCACTTCTCTTATAATATCTTATGGGAAATGCGATAGGATTGATGAAGCAAAAAGGGTATTTTATGAGACGGATAAATTAAAGCTAGAACATCTTAAAGCACTGTCAACTGTTTTTGTCCATATTGGTCTTCAAGCGGATGCTCTGAATTTGTTTAATGTGTCAAGGGGATTAGACCTTGAAGTTGACGTGGCTTCTTTCAGTAATGCCATTAAAGCTTGTGGTGGTATGACAAGTCTTGAGCAAGGAAGAGGAATTCACTCTCTAGCTATCAGATCTGGTTTTGATCAAGATATCTTTATTCAAAGTGCTCTTATTGATATGTATTGTAAAAGTGGAAGTTTAACAGAAGCAGAAAAAATCTTCAAAAGTACATCGGATAATTTGGCAGCTTGGAATGCCATGATCATGGGATATTCTTACCATGGTCGGTCTAATGAAGTCTTCTCAATTTTCAATAAGATGGTTGAAAATGGACTAAAACCCGATGAGATTACCTTTCTCGGAGTTTTGACATCTTGTCGCCATTCTGGGTTGGTAAAGGAAGCACGTTTTTATTTAAACTCCATGTTTGTACTACATGGAGTAATTCCTCAACTAGAACACTATGCCAGTGTAGTTGATTTGCTTGGTCAGGTTGGACTTTTAGAAGAAGCAAAAAGGATTATTGATGAAATGCCTATTCACTGTGATGCTCATATGTGGCAGATTCTTCTATCAGCCTGTAGCATACATAAAAATGTTGAGCTAGGAAGTCTAGCTGCAAGAAAACTTCTTGACCTGCAGCCCGGAAATGAAACTGCATATCTCCTTCTTTCTAACATTCATGCTTCGGTAGGTACGTGGAAATCTGTCCAGGAATTGAGGAAAGAAATGAAGGAAAAAATTATCCGTAAGGAACCGGGTTTTAGTTCGATTCAAGTTGGAAGAGTGGTAAATTTCTTTTTGGCTGGTGATACATCGCATCTTATGAATGACAAGATATACACGGAGCTAGAAAAGTTATATAGGCAGATTTGTTCCTATCCCAGATTAGAACTAGAGGATGCATTTGAAGTGGGTTTACAAGCTGTGTGA 2439 39.28 MKKFSRKFSPHWIKSLVSHGLHPQALEASTSFLPNPLPTDQSYALFLKSGHSLHPILSASLITHFSRFGDFSRSYRFLWDTQFPDIVNFNVLISGFARVGQTQSVFELFDELRHLGLEPDVFTLSSLVKGCDIVEENEIVHGVAFRLGFDSGAYLVSGFIENYSRAGDILSAEKCFEDCFVAEAVVCTTMVCGYVWNGEYEKSKKIFMEMTKLSLEINEFSCTGVLGGIFYGEEGKIIHTLTMKRGLLCGCSIHLNNAIINMYSRCGYKSDAAKVFDEMSEPDIVSWTGRIGAALDEGEALECFRYLRARDIELNEYPIVNLLSVITSSGMLLSGKKIQAHCHKDGHLLFISVSNHLISMYSKHGQMDEAKLVFNDMVSIDSVSCNSLIDGYSENGLLKETFAAFSQMRLFSFHPDLYTFVSLLKAAAKSKSPKLAVQIHCYIVKCRFVADHSIITSLIISYGKCDRIDEAKRVFYETDKLKLEHLKALSTVFVHIGLQADALNLFNVSRGLDLEVDVASFSNAIKACGGMTSLEQGRGIHSLAIRSGFDQDIFIQSALIDMYCKSGSLTEAEKIFKSTSDNLAAWNAMIMGYSYHGRSNEVFSIFNKMVENGLKPDEITFLGVLTSCRHSGLVKEARFYLNSMFVLHGVIPQLEHYASVVDLLGQVGLLEEAKRIIDEMPIHCDAHMWQILLSACSIHKNVELGSLAARKLLDLQPGNETAYLLLSNIHASVGTWKSVQELRKEMKEKIIRKEPGFSSIQVGRVVNFFLAGDTSHLMNDKIYTELEKLYRQICSYPRLELEDAFEVGLQAV 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45611562 45614000 + Bma021934.1 Bma05g00825 82909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00825 812 Pfam E motif 699 761 IPR046848 -
Bma05g00825 812 Gene3D Tetratricopeptide repeat domain 344 439 IPR011990 GO:0005515
Bma05g00825 812 Gene3D Tetratricopeptide repeat domain 40 140 IPR011990 GO:0005515
Bma05g00825 812 Gene3D Tetratricopeptide repeat domain 141 234 IPR011990 GO:0005515
Bma05g00825 812 Gene3D Tetratricopeptide repeat domain 235 343 IPR011990 GO:0005515
Bma05g00825 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Bma05g00825 812 TIGRFAM PPR: pentatricopeptide repeat domain 355 379 IPR002885 -
Bma05g00825 812 TIGRFAM PPR: pentatricopeptide repeat domain 383 416 IPR002885 -
Bma05g00825 812 TIGRFAM PPR: pentatricopeptide repeat domain 185 218 IPR002885 -
Bma05g00825 812 TIGRFAM PPR: pentatricopeptide repeat domain 89 121 IPR002885 -
Bma05g00825 812 TIGRFAM PPR: pentatricopeptide repeat domain 585 618 IPR002885 -
Bma05g00825 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 582 616 IPR002885 -
Bma05g00825 812 Pfam PPR repeat 557 577 IPR002885 -
Bma05g00825 812 Pfam PPR repeat 657 680 IPR002885 -
Bma05g00825 812 Pfam PPR repeat 456 477 IPR002885 -
Bma05g00825 812 Pfam PPR repeat 355 379 IPR002885 -
Bma05g00825 812 Pfam PPR repeat 185 213 IPR002885 -
Bma05g00825 812 Pfam PPR repeat 257 281 IPR002885 -
Bma05g00825 812 PANTHER - 46 806 - -
Bma05g00825 812 Gene3D Tetratricopeptide repeat domain 582 766 IPR011990 GO:0005515
Bma05g00825 812 Gene3D Tetratricopeptide repeat domain 479 581 IPR011990 GO:0005515
Bma05g00825 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Bma05g00825 812 Pfam PPR repeat family 381 428 IPR002885 -
Bma05g00825 812 Pfam PPR repeat family 84 131 IPR002885 -
Bma05g00825 812 Pfam PPR repeat family 582 628 IPR002885 -
Bma05g00825 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 119 IPR002885 -
Bma05g00825 812 PANTHER OS01G0913400 PROTEIN-RELATED 46 806 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00825 - - - qsu:112032565 943.725
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00825 Bma-Chr5:45611562 Bma07g00390 Bma-Chr7:4772840 1.64E-09 dispersed
Bma05g00825 Bma-Chr5:45611562 Bma02g01043 Bma-Chr2:51951043 3.84E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g27 Blo02g01116 . . Bda08g00510 Bpe05g00653 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0800 . . . . . . . . . . . Bma05g00825 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016667 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6